PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002444.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 671aa    MW: 78139.1 Da    PI: 6.5871
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002444.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS186.41.9e-5713546374
         GRAS   6 lecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                  ++cA+a+++gdl+ a++l + ++ l a+++ + +++++ yf+eALa+r+++     ++  +p +        + +  k+ +e sP+  f+ + +  aI
  CCG002444.1   1 MDCAKAIADGDLKFADQLFSDMESLsAAETNRVTKKVVEYFAEALARRVHG-----VHPRNPFP-----LLPSSNLKKISYEPSPLEWFACMSTDYAI 88 
                  68***********************45555599******************.....33333333.....334445566779***************** PP

         GRAS 103 leavege.ervHiiDfd.isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                   + ++ + +++H i ++ +  + Q  +L + L    +g p s++ T + ++ s++ + l+e ++ ++++A++ +v+f++++l a+++ d+  + Lr++
  CCG002444.1  89 RDVLDVKkNKLHLIEISsLVDCWQRHSLEEYLIHAHHGMPlSFQYTSIRPKLSKNDDYLQENRRMITEVAQRSRVDFKYRALFADSVPDIVESVLRLE 186
                  *****887999*****73679************88877777*********9999************************************99999887 PP

         GRAS 198 p...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +   +E ++V +v+qlh+ll    +le + d+vL+ +k+l+P+++v+veqead n+ +F+ rf+ +++yy  lf+sle    +++      Er+ l++
  CCG002444.1 187 RtseDEIIIVRWVFQLHKLL----ALEGAVDKVLSKLKDLKPDIMVIVEQEADNNTDDFFYRFATSFKYYLNLFESLELY--ATNLSSLIWERH-LRW 277
                  7778***************9....55555666*********************************************998..689999999*99.*** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+nvva eg +r+erhetl++W++rl  a F +v+l ++  ++    l  ++   y++ee+sg  vl   ++pL+++S+W+
  CCG002444.1 278 QICNVVASEGIDRIERHETLARWQQRLYGARFCSVALCSDQFAD---FLYDFS--AYKIEENSGFPVLLAAGHPLIFASVWK 354
                  *************************************9876655...565665..79************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.8461339IPR005202Transcription factor GRAS
PfamPF035146.5E-551354IPR005202Transcription factor GRAS
PROSITE profilePS5060013.792382626IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540019.22E-32497653No hitNo description
Gene3DG3DSA:3.30.310.1301.2E-14512621No hitNo description
PfamPF029021.4E-19530652IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MDCAKAIADG DLKFADQLFS DMESLSAAET NRVTKKVVEY FAEALARRVH GVHPRNPFPL  60
LPSSNLKKIS YEPSPLEWFA CMSTDYAIRD VLDVKKNKLH LIEISSLVDC WQRHSLEEYL  120
IHAHHGMPLS FQYTSIRPKL SKNDDYLQEN RRMITEVAQR SRVDFKYRAL FADSVPDIVE  180
SVLRLERTSE DEIIIVRWVF QLHKLLALEG AVDKVLSKLK DLKPDIMVIV EQEADNNTDD  240
FFYRFATSFK YYLNLFESLE LYATNLSSLI WERHLRWQIC NVVASEGIDR IERHETLARW  300
QQRLYGARFC SVALCSDQFA DFLYDFSAYK IEENSGFPVL LAAGHPLIFA SVWKPASATH  360
FSGENIGNSD DTMRGTDLNH PITIQEESTS PVVEPEAVSS SEFAEPEVVS SSESDDDNEY  420
VYNRIRRLTH GKIWSVEEVR EYLVSPLKEK ESKRLSRWKS RQLTRNVAGR DKQLNVTDTS  480
LASLLRIPPS STPIREEKQY YVDDSVINAF FDLLKKRQEK FPDWYKRNSS LPTWTMLFIP  540
LCLENHWILI CVDMEKREFL WLDSLNSPPD AHHTEKTTIS EWLVKHLLPV LGYRNSQQLK  600
LKQLSIPYQT NRIDCGIFVM KYADCLAHCD HFPFTQQDMP HFRLRVFLDI YRGRLPVPPS  660
HVRFLRALYK I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-19135592474Protein SHORT-ROOT
5b3h_B3e-19135538420Protein SHORT-ROOT
5b3h_E3e-19135538420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1483370.0EF148337.1 Populus trichocarpa x Populus deltoides clone WS01313_H03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035375.10.0PREDICTED: DELLA protein GAIP-like isoform X3
TrEMBLA0A2K2AR240.0A0A2K2AR24_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2806323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-53GRAS family protein