PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002398.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 382aa    MW: 42996.2 Da    PI: 7.924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002398.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07124144526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+ f r G C++G++C F+Hg
  CCG002398.1 124 VCPEFKR-GGCSRGENCEFSHG 144
                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4123146IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5124144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4151182IPR000571Zinc finger, CCCH-type
SMARTSM003561.6154177IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484154178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSTICAEQHK PYTPHQLLSP KRPLRDLEIL PRKLLTKKTH QESLDMSPYE TNLQRFLPYN  60
DYSNEKVVDG ELDPYSSDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPRRFHY  120
SGTVCPEFKR GGCSRGENCE FSHGVFECWL HPSRYRTEAC KDGKNCKRKV CFFAHSPRQL  180
RILPEVSSRN KSLASPCSSL NHSHCCVVCH SMTSSPTSTL LGMSHMSPPL SPSLSPPLSP  240
VKHQSLSGFS PISRYNETLS KFRAGVVSYK DVLTEVMSSL EAMNFNEGAS VSSPMSSSTN  300
HNRNVNSTTP WNIDVSFSGE DQPQFILSPS TPTPSSNFFN GDCSSNNGLF VDDKINDHNN  360
IGDGGLACTS DPDLGWVNEL LM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029046.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA15e-91C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLU5FMC60.0U5FMC6_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-88C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]