PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG002323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29694.9 Da PI: 9.9548 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 6e-27 | 72 | 122 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCdaev+++++s t k+++y s CCG002323.1 72 KKIENSTNRQVTYSKRRNGLFKKAHELTVLCDAEVSLVMVSCTHKVHDYTS 122 68**********************************************975 PP | |||||||
2 | K-box | 78.8 | 1.3e-26 | 134 | 232 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yq+++g +l+++++e ++++l+kLk+ + +++re R+++G++L++Ls+++L++Le+++e++ + i ++ +++l++qie+++kk ++++++n++L+ +l CCG002323.1 134 YQQTKGIDLWSSHYEIMKEKLEKLKEVNMKIRREMRQRMGQCLNDLSFQDLHSLESDMESAWRVIHDRADRVLTNQIETSKKKARNVEQINRKLHVEL 231 78999999**************************************************************************************9887 PP K-box 99 e 99 e CCG002323.1 232 E 232 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.796 | 64 | 124 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.0E-38 | 64 | 123 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.01E-37 | 65 | 143 | No hit | No description |
SuperFamily | SSF55455 | 7.59E-35 | 66 | 158 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 66 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-26 | 66 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-23 | 73 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-26 | 86 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-26 | 101 | 122 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-18 | 145 | 231 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.035 | 147 | 237 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MDGFITNLLL SLHLSSISNI LLFISLRKER FRIKFEGASY YQFGGIEKFK ERRGSSSRES 60 NRNMARGKIQ IKKIENSTNR QVTYSKRRNG LFKKAHELTV LCDAEVSLVM VSCTHKVHDY 120 TSPSTTTKRI FDQYQQTKGI DLWSSHYEIM KEKLEKLKEV NMKIRREMRQ RMGQCLNDLS 180 FQDLHSLESD MESAWRVIHD RADRVLTNQI ETSKKKARNV EQINRKLHVE LEAMDQDPYG 240 LVDNGGDYNS VMGF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-14 | 64 | 122 | 1 | 59 | MEF2C |
5f28_B | 2e-14 | 64 | 122 | 1 | 59 | MEF2C |
5f28_C | 2e-14 | 64 | 122 | 1 | 59 | MEF2C |
5f28_D | 2e-14 | 64 | 122 | 1 | 59 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028945.1 | 1e-142 | PREDICTED: floral homeotic protein DEFICIENS-like | ||||
Swissprot | P23706 | 1e-88 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | U5GNN8 | 1e-135 | U5GNN8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s02990.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 6e-74 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|