PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002323.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29694.9 Da    PI: 9.9548
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002323.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.66e-2772122151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  k+ien++nrqvt+skRrng++KKA+EL vLCdaev+++++s t k+++y s
  CCG002323.1  72 KKIENSTNRQVTYSKRRNGLFKKAHELTVLCDAEVSLVMVSCTHKVHDYTS 122
                  68**********************************************975 PP

2K-box78.81.3e-26134232199
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  yq+++g +l+++++e ++++l+kLk+ + +++re R+++G++L++Ls+++L++Le+++e++ + i ++ +++l++qie+++kk ++++++n++L+ +l
  CCG002323.1 134 YQQTKGIDLWSSHYEIMKEKLEKLKEVNMKIRREMRQRMGQCLNDLSFQDLHSLESDMESAWRVIHDRADRVLTNQIETSKKKARNVEQINRKLHVEL 231
                  78999999**************************************************************************************9887 PP

        K-box  99 e 99 
                  e
  CCG002323.1 232 E 232
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.79664124IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-3864123IPR002100Transcription factor, MADS-box
CDDcd002651.01E-3765143No hitNo description
SuperFamilySSF554557.59E-3566158IPR002100Transcription factor, MADS-box
PROSITE patternPS00350066120IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-266686IPR002100Transcription factor, MADS-box
PfamPF003191.7E-2373120IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-2686101IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-26101122IPR002100Transcription factor, MADS-box
PfamPF014862.6E-18145231IPR002487Transcription factor, K-box
PROSITE profilePS5129714.035147237IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDGFITNLLL SLHLSSISNI LLFISLRKER FRIKFEGASY YQFGGIEKFK ERRGSSSRES  60
NRNMARGKIQ IKKIENSTNR QVTYSKRRNG LFKKAHELTV LCDAEVSLVM VSCTHKVHDY  120
TSPSTTTKRI FDQYQQTKGI DLWSSHYEIM KEKLEKLKEV NMKIRREMRQ RMGQCLNDLS  180
FQDLHSLESD MESAWRVIHD RADRVLTNQI ETSKKKARNV EQINRKLHVE LEAMDQDPYG  240
LVDNGGDYNS VMGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-1464122159MEF2C
5f28_B2e-1464122159MEF2C
5f28_C2e-1464122159MEF2C
5f28_D2e-1464122159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028945.11e-142PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotP237061e-88DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLU5GNN81e-135U5GNN8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s02990.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]