PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 293aa MW: 32831.5 Da PI: 7.9387 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.7 | 8.6e-31 | 72 | 128 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++rY eCl+NhAas Gg+++DGCgEfmp geeg+ +alkCaAC+CHRnFHRre + CCG002275.1 72 SNTRYLECLRNHAASAGGNVFDGCGEFMPG-GEEGSLEALKCAACDCHRNFHRRELDG 128 5789*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-21 | 67 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.3E-28 | 74 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.0E-28 | 75 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.977 | 76 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.0E-18 | 211 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 218 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.5E-29 | 221 | 278 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEIRGPENDI RTSVPSGYSH QSSGLERRKD GNHNGSSVLT YTQTLDHPRQ PSRSPNPDRL 60 AIISSGSNSK TSNTRYLECL RNHAASAGGN VFDGCGEFMP GGEEGSLEAL KCAACDCHRN 120 FHRRELDGEI QFSPGSRSTT MVHNLQLAPP LPSPTVLHHH HHHQRYSMGL HSSPNTANMV 180 QPMSVAFGGT SGGTESSSEE LNPFQSNAEG VPPPPPYVMS KKRYRTKFTQ EQKDKMMEFA 240 EKVGWRINRQ DEEEVERFCA EVGVRRQVFK VWMHNNKNLK KQQQQQVPLD ENP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-24 | 220 | 278 | 16 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028851.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9FRL5 | 2e-65 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | B9GRN0 | 0.0 | B9GRN0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s03660.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 8e-59 | homeobox protein 33 |