PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002275.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 293aa    MW: 32831.5 Da    PI: 7.9387
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002275.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.78.6e-3172128259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +++rY eCl+NhAas Gg+++DGCgEfmp  geeg+ +alkCaAC+CHRnFHRre + 
  CCG002275.1  72 SNTRYLECLRNHAASAGGNVFDGCGEFMPG-GEEGSLEALKCAACDCHRNFHRRELDG 128
                  5789*************************9.999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2167130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.3E-2874126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.0E-2875125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.97776125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.0E-18211281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-29218282IPR009057Homeodomain-like
TIGRFAMsTIGR015653.5E-29221278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEIRGPENDI RTSVPSGYSH QSSGLERRKD GNHNGSSVLT YTQTLDHPRQ PSRSPNPDRL  60
AIISSGSNSK TSNTRYLECL RNHAASAGGN VFDGCGEFMP GGEEGSLEAL KCAACDCHRN  120
FHRRELDGEI QFSPGSRSTT MVHNLQLAPP LPSPTVLHHH HHHQRYSMGL HSSPNTANMV  180
QPMSVAFGGT SGGTESSSEE LNPFQSNAEG VPPPPPYVMS KKRYRTKFTQ EQKDKMMEFA  240
EKVGWRINRQ DEEEVERFCA EVGVRRQVFK VWMHNNKNLK KQQQQQVPLD ENP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-242202781674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028851.10.0PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9FRL52e-65ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLB9GRN00.0B9GRN0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.18e-59homeobox protein 33