PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002195.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 518aa    MW: 56479.8 Da    PI: 7.7975
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002195.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.43.3e-14107146242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ e+
  CCG002195.1 107 KQKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVEN 146
                  89**************************.********9875 PP
2TCR51.12.6e-16191230140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  CCG002195.1 191 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 230
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-15106146IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.655107231IPR005172CRC domain
PfamPF036387.2E-11108143IPR005172CRC domain
SMARTSM011148.4E-20191232IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-13194229IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MGESEGSEFP PKKLQQSETA DFPAKKLARQ LDFTQGVLPE LQPSPVVVTP ASAQCQPLPQ  60
PHPQPQPQVV SIPGATQQQP AARAVKPESP KSRPRLNAEL KDGTPKKQKQ CNCKHSRCLK  120
LYCECFASGT YCDGCNCVNC YNNVENEAAR REAVEATLER NPNAFRPKIA SSPHGTRDSR  180
EETGEGLVFV KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFE GSEERQALFH  240
GDHGNNMAYI QQAANAAITG AIGSSGYASL PVSRKRKGQE LFFGQTVKDP SFHRLGHFQQ  300
ASHIRPAAPS SPLPYNPVAR AGNTTTLGSS KITYRSLLAD IIQSQDLKEL CSVLVVLSGE  360
AAKTLSDQRN SMKKQVEDQR DTFLASSTQE RLQSQKEFDA DKIVSNDCSS ANHANEGGLD  420
DSSLDGVDMP KGRPMSPGTL ALMCDEQDTI FMAAASPNGL MGHGCNTSSQ LPCGQGMAEA  480
HAEQERIVLT KFRDCLNRLI TFGEIKGKFL SFCQICTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-33982401132Protein lin-54 homolog
5fd3_B7e-33982401132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142820.0AC214282.1 Populus trichocarpa clone POP018-K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012707.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_011012708.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K2A3650.0A0A2K2A365_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-179Tesmin/TSO1-like CXC domain-containing protein