PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002190.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 384aa    MW: 42245.3 Da    PI: 6.8181
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002190.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box253.9e-081963338
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.........Ht 38
                 +++C+ ++   +  fC+ ++ +lC +C +++H++         H+
  CCG002190.1 19 AKRCDSCKTAAAAAFCRADSAFLCLNCDTKIHHSgvnskimsrHE 63
                 579******99********************75546666666665 PP
2zf-B_box26.71.2e-0865110342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  CCG002190.1  65 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 110
                  689*****************************66899999999986 PP
3CCT69.67.8e-24311354144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  CCG002190.1 311 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 354
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6651767IPR000315B-box-type zinc finger
SMARTSM003365.2E-51756IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.40.102.2E-41875IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF006435.7E-62063IPR000315B-box-type zinc finger
CDDcd000214.02E-62167No hitNo description
PROSITE profilePS5011910.8563110IPR000315B-box-type zinc finger
SMARTSM003369.9E-1663110IPR000315B-box-type zinc finger
PfamPF006431.0E-665110IPR000315B-box-type zinc finger
CDDcd000214.58E-966110No hitNo description
PROSITE profilePS5101716.787311353IPR010402CCT domain
PfamPF062036.0E-18311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGIEVESLKN LTGGWSVAAK RCDSCKTAAA AAFCRADSAF LCLNCDTKIH HSGVNSKIMS  60
RHERVWMCEV CEQAPAAVTC KADAAALCVT CDADIHSANP LARRHERVPV EPFYDSAESI  120
VKTSSAFNFL VPGDQNGVSA YDHNDEIEGV SWLLHGNHTT HDLNSKINIE NPVVKTGDMF  180
FCEMDPFLDF EYQNSMDGRY KQSHGGGGAG ADSVVPVQNK PAPLPVIDHK NCFDIDFCRS  240
KLTSFSSYPS QSLSHSVSSS SLDVGVVPDG NSMSDISYPF GRSMNNYTDP NMPISGSTTN  300
QAAAQLAGID REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTEMESDM  360
DTLYNSASSV PFLADTHYGV VPSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247942e-72CU224794.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012685.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-124COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2I4KKP00.0A0A2I4KKP0_POPTR; Co-like family protein
STRINGPOPTR_0018s10510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-107CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]