PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002131.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 644aa MW: 74317.8 Da PI: 6.3183 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 178.3 | 5.8e-55 | 18 | 327 | 1 | 329 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 lv+ L++cA+av+ g+l+la+ l +++ l +++ + ++++++yf+eALa+r+++ +y p + + s+ +++ ++e+ P ++ +l+ CCG002131.1 18 LVNKLMACAKAVAVGNLKLADVLFEEMGGLTAEETsEVTKKVVSYFAEALARRVHG----VYPRNPFPLLP-S-SIVNTQRSLRYFEIIPA-TIDYLA 108 6789**************************5555549******************9....77655555554.2.3333333334889***6.699999 PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQ.WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 a I g++ vH iDf+i+ G+ + +Ll L sR +R+T +g++ ++++ ++e +++L+++A++l+v+f+ + + a+ + +e L CCG002131.1 109 AAYFI-----GKQPVHFIDFSIMLGTReYDSLL-FLPSR-----VFRLTNIGPNPCKDNNHIQERQRKLTELARQLNVDFQLKQFEANIPAVIEECVL 195 98655.....99*************96377776.56666.....9********8888**************************985554344444444 PP GRAS 195 rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 ++++ +E ++V + ++lh+ll+ ++++e vL+ +k+l+Pk + + eqeadhns++F++rf+ +++yys +fd ++ e + + +Er+ CCG002131.1 196 KLEStsdDEIVIVRWEFELHKLLAVEGAIER----VLSKLKELKPKFMLINEQEADHNSPDFFDRFALSFQYYSRVFDHFNCFS-GEPDREEILERH- 287 4433346****************88888888....*********************************************9984.444555678888. PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 +r+i+nvvac+g +r+erh+t+ +W+erl+ aGF+p + CCG002131.1 288 WRRQISNVVACKGIDRVERHQTFDQWKERLRGAGFRPFQN 327 8***********************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.4 | 1 | 352 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-52 | 18 | 327 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50600 | 14.694 | 373 | 600 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
SuperFamily | SSF54001 | 9.22E-31 | 492 | 628 | No hit | No description |
Gene3D | G3DSA:3.30.310.130 | 3.1E-14 | 494 | 595 | No hit | No description |
Pfam | PF02902 | 1.2E-19 | 507 | 625 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0008234 | Molecular Function | cysteine-type peptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MTGPPDLNLV LTEMSSPLVN KLMACAKAVA VGNLKLADVL FEEMGGLTAE ETSEVTKKVV 60 SYFAEALARR VHGVYPRNPF PLLPSSIVNT QRSLRYFEII PATIDYLAAA YFIGKQPVHF 120 IDFSIMLGTR EYDSLLFLPS RVFRLTNIGP NPCKDNNHIQ ERQRKLTELA RQLNVDFQLK 180 QFEANIPAVI EECVLKLEST SDDEIVIVRW EFELHKLLAV EGAIERVLSK LKELKPKFML 240 INEQEADHNS PDFFDRFALS FQYYSRVFDH FNCFSGEPDR EEILERHWRR QISNVVACKG 300 IDRVERHQTF DQWKERLRGA GFRPFQNASS LFGTTYKFPM FYPFHGHPLF FASLWEPIDP 360 TESSRGVGIS NPITIQDASV SSVIEPEEVC SSDSEDDSAY DNSNTLGIFW NQKKWSAEEV 420 REYLVSSFTE RESRRMNRWM SRRLTGNSAG RDKKLSVCDT SLASLLRIPP SNTPIWEAKQ 480 YYVDDSSFLL SGKWTESKVL SYLNIEEIAG TSKLFIPVCL ENHWILVCVD IESRALLWLD 540 SLNSHHDKKG VISRWIKEHL MPKLGYDNAQ EWQFLEPVDL PRQTNGVDCG IFVMKYADCL 600 ALGDHFPFTQ QDIPLFRRHI FLDIYRGKLR PQILSKNFRA YYYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-18 | 25 | 349 | 26 | 356 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209270 | 0.0 | AC209270.1 Populus trichocarpa clone POP015-B22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046037.1 | 0.0 | PREDICTED: uncharacterized protein LOC105140768 isoform X1 | ||||
TrEMBL | U7DXX5 | 0.0 | U7DXX5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s01030.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 3e-59 | GRAS family protein |