PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 644aa    MW: 74317.8 Da    PI: 6.3183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002131.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS178.35.8e-55183271329
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  lv+ L++cA+av+ g+l+la+ l +++  l +++  + ++++++yf+eALa+r+++    +y   p    + + s+ +++    ++e+ P  ++ +l+
  CCG002131.1  18 LVNKLMACAKAVAVGNLKLADVLFEEMGGLTAEETsEVTKKVVSYFAEALARRVHG----VYPRNPFPLLP-S-SIVNTQRSLRYFEIIPA-TIDYLA 108
                  6789**************************5555549******************9....77655555554.2.3333333334889***6.699999 PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQ.WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  a   I     g++ vH iDf+i+ G+  + +Ll  L sR      +R+T +g++  ++++ ++e +++L+++A++l+v+f+ + + a+  + +e   L
  CCG002131.1 109 AAYFI-----GKQPVHFIDFSIMLGTReYDSLL-FLPSR-----VFRLTNIGPNPCKDNNHIQERQRKLTELARQLNVDFQLKQFEANIPAVIEECVL 195
                  98655.....99*************96377776.56666.....9********8888**************************985554344444444 PP

         GRAS 195 rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  ++++   +E ++V + ++lh+ll+ ++++e     vL+ +k+l+Pk + + eqeadhns++F++rf+ +++yys +fd ++     e + +  +Er+ 
  CCG002131.1 196 KLEStsdDEIVIVRWEFELHKLLAVEGAIER----VLSKLKELKPKFMLINEQEADHNSPDFFDRFALSFQYYSRVFDHFNCFS-GEPDREEILERH- 287
                  4433346****************88888888....*********************************************9984.444555678888. PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                   +r+i+nvvac+g +r+erh+t+ +W+erl+ aGF+p + 
  CCG002131.1 288 WRRQISNVVACKGIDRVERHQTFDQWKERLRGAGFRPFQN 327
                  8***********************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.41352IPR005202Transcription factor GRAS
PfamPF035142.0E-5218327IPR005202Transcription factor GRAS
PROSITE profilePS5060014.694373600IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540019.22E-31492628No hitNo description
Gene3DG3DSA:3.30.310.1303.1E-14494595No hitNo description
PfamPF029021.2E-19507625IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MTGPPDLNLV LTEMSSPLVN KLMACAKAVA VGNLKLADVL FEEMGGLTAE ETSEVTKKVV  60
SYFAEALARR VHGVYPRNPF PLLPSSIVNT QRSLRYFEII PATIDYLAAA YFIGKQPVHF  120
IDFSIMLGTR EYDSLLFLPS RVFRLTNIGP NPCKDNNHIQ ERQRKLTELA RQLNVDFQLK  180
QFEANIPAVI EECVLKLEST SDDEIVIVRW EFELHKLLAV EGAIERVLSK LKELKPKFML  240
INEQEADHNS PDFFDRFALS FQYYSRVFDH FNCFSGEPDR EEILERHWRR QISNVVACKG  300
IDRVERHQTF DQWKERLRGA GFRPFQNASS LFGTTYKFPM FYPFHGHPLF FASLWEPIDP  360
TESSRGVGIS NPITIQDASV SSVIEPEEVC SSDSEDDSAY DNSNTLGIFW NQKKWSAEEV  420
REYLVSSFTE RESRRMNRWM SRRLTGNSAG RDKKLSVCDT SLASLLRIPP SNTPIWEAKQ  480
YYVDDSSFLL SGKWTESKVL SYLNIEEIAG TSKLFIPVCL ENHWILVCVD IESRALLWLD  540
SLNSHHDKKG VISRWIKEHL MPKLGYDNAQ EWQFLEPVDL PRQTNGVDCG IFVMKYADCL  600
ALGDHFPFTQ QDIPLFRRHI FLDIYRGKLR PQILSKNFRA YYYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-182534926356Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2092700.0AC209270.1 Populus trichocarpa clone POP015-B22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046037.10.0PREDICTED: uncharacterized protein LOC105140768 isoform X1
TrEMBLU7DXX50.0U7DXX5_POPTR; Uncharacterized protein
STRINGPOPTR_0017s01030.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-59GRAS family protein