PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002068.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 366aa    MW: 41091.4 Da    PI: 6.259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002068.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
      CCG002068.1 16 RGPWSPAEDLRLIAFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding54.33e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
      CCG002068.1  69 RGNFSEEEEDTIIKLHQTLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.8791163IPR017930Myb domain
SuperFamilySSF466897.49E-3014110IPR009057Homeodomain-like
SMARTSM007179.0E-131565IPR001005SANT/Myb domain
PfamPF002498.0E-151663IPR001005SANT/Myb domain
CDDcd001675.28E-91863No hitNo description
PROSITE profilePS5129425.9464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-2867118IPR009057Homeodomain-like
SMARTSM007178.0E-1668116IPR001005SANT/Myb domain
PfamPF002492.8E-1669114IPR001005SANT/Myb domain
CDDcd001671.63E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGKGRAPCCD KSQVKRGPWS PAEDLRLIAF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFSEEEEDTI IKLHQTLGNK WSKIASHLPG RTDNEIKNVW NTHLKKKLAC  120
KDGEHSEGDE SKGSSSTSSS SSSSSTIMSS GKRALEMELD EQKNQGFSTK KPRILENEED  180
SSPRGVSNNQ FKPAMKPNEL SSSSFSSNNS SITNSSQADV SELDGEKTDS FFNFRGRYNV  240
RNSLEEVNKP EEIVAEIPFE SDYDFWNMLD SLSSFQSSGT QLQNVEDGQS SRFGDAYNIG  300
EVENKKWLRC LERELGLDAT KDENQNLSKN AAESTIVPEN FQHDIPLKPA EVHSGTVGNF  360
HLWPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26161184105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707920.0AB970792.1 Populus tremula x Populus tremuloides PtxtMYB192 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012652.10.0PREDICTED: myb-related protein Zm1-like
TrEMBLB9HGV50.0B9HGV5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s08190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.13e-75myb domain protein 58