PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002067.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 335aa    MW: 37153.9 Da    PI: 8.5278
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002067.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.36.5e-3264120459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  ++Yk+ClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaA gCHRnFHRre+e+
  CCG002067.1  64 ITYKKCLKNHAATIGGHALDGCGEFMPSPTATnTNPTSLKCAAWGCHRNFHRREPED 120
                  79***************************999899*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.3E-2664118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1764123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.7E-2965117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.32766117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.69E-18194263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-29196264IPR009057Homeodomain-like
TIGRFAMsTIGR015656.8E-24202259IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDMTITTTTP TNNNNTNTPT PQSPEAYTET AARIHDTKPL PFTNGVLKRH PPHHQHFSPS  60
PIVITYKKCL KNHAATIGGH ALDGCGEFMP SPTATNTNPT SLKCAAWGCH RNFHRREPED  120
SPPHTATTTT IEYQSHHRHH PLPPPQAQPL HNGSPNSASP PPISSSYYPS APQILLALSG  180
GVSGLNENAN INVPPPVGSS PRKRFRTKFS QSQKERMFQF AERVGWKMQK RDEDLVQEFC  240
NEVGVDKGVL KVWMHNNKNS LGKKEHLNGN NNDILRSNNL ENSNNSNNET NKNITIDNNN  300
SSEGLNHHHN HHHHHHFENE SHVAHVGTNG SSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-212032601875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010066.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-72ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2K1X5121e-155A0A2K1X512_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11920.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.18e-67homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]