PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002018.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 502aa    MW: 57297.1 Da    PI: 5.3364
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002018.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.7e-3042125186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+kqe+laL+++r++m+ +++++ lk+plWeevskk+ e g++rs+k+Ckek+en+ k+++++keg+++r++++  t+++f+ql+
  CCG002018.1  42 RWPKQETLALLKIRSDMDVAFKDSGLKAPLWEEVSKKLNELGYNRSAKKCKEKFENIYKYHRRTKEGRSGRSNGK--TYRFFEQLQ 125
                  8*********************************************************************96655..5******98 PP
2trihelix1024.5e-32339424187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k+e+ aLi +r+++e +++++  k+plWee+s+ m++ g+ rs+k+Ckekwen+nk++k++ke++k+r +++s+tcpyf+ql+a
  CCG002018.1 339 RWPKEEIEALIGLRTKLEFQYEENGPKGPLWEEISASMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKRR-PGDSKTCPYFQQLDA 424
                  8********************************************************************97.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3173599IPR017877Myb-like domain
SMARTSM007172.2E-439101IPR001005SANT/Myb domain
CDDcd122031.14E-2341106No hitNo description
PfamPF138377.2E-2041127No hitNo description
SuperFamilySSF466894.36E-5335408IPR009057Homeodomain-like
SMARTSM007179.3E-4336398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-5337396IPR009057Homeodomain-like
PROSITE profilePS500907.642338396IPR017877Myb-like domain
CDDcd122037.19E-25338403No hitNo description
PfamPF138373.6E-22339425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
METSTTFPEN SNAATGNRDS EEGDEEMRVK AEEGDQHSTG NRWPKQETLA LLKIRSDMDV  60
AFKDSGLKAP LWEEVSKKLN ELGYNRSAKK CKEKFENIYK YHRRTKEGRS GRSNGKTYRF  120
FEQLQALDNT EALLPPPSSD KVHTSMAAAL VNPVSFIPNA VPCSIQSPGM NFVDTTSTST  180
ASASSEEAEG TRKKKRKLTD FFERLMKEVI DKQENLQNKF LEAIEKCEQE RIAREEAWKM  240
QEFDRIKREQ ELLVRERAIA DAKDAAVLAF LQKFSEQGIS VQLPDNPIVP MKFPDNQTVP  300
VPSSAPVQLP KNQAVPVENV VKTRENSSIE SFVNISPSRW PKEEIEALIG LRTKLEFQYE  360
ENGPKGPLWE EISASMKKLG YDRSAKRCKE KWENMNKYFK RVKESNKRRP GDSKTCPYFQ  420
QLDALYREKN RRVDGSGFDL KPEELLMHVM GGQGDQQQPE SATTEDRGSE NVDQNQENYR  480
DKEDGEGERI VANDPSSIEI ME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045710.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-125TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLB9GGS30.0B9GGS3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s31660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-117Trihelix family protein