PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG001732.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SRS | ||||||||
Protein Properties | Length: 204aa MW: 22590.5 Da PI: 8.8591 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 163.7 | 1e-50 | 11 | 141 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 g+++Cq+CGnqakkdC+++RCRtCC+s+gf+C+thvkstWvpa krr+r q+l ++++ + +++kr+re+ +++ le CCG001732.1 11 GGSRCQECGNQAKKDCVYMRCRTCCNSKGFQCQTHVKSTWVPACKRRQRAQNLLPCQQQQ---LQGHNPKRPREN-----------------PSTGLE 88 7789*********************************************88888775544...456677777764.................344678 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++P+ev+++ frc rvss+d++ +++aYqt+v+igG vfkGiLydqG++e CCG001732.1 89 IENFPAEVNTTVTFRCFRVSSIDESVDQFAYQTSVNIGGRVFKGILYDQGPHE 141 899***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.1E-54 | 12 | 140 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.8E-25 | 15 | 56 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.0E-21 | 92 | 139 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MMMMRQGSNL GGSRCQECGN QAKKDCVYMR CRTCCNSKGF QCQTHVKSTW VPACKRRQRA 60 QNLLPCQQQQ LQGHNPKRPR ENPSTGLEIE NFPAEVNTTV TFRCFRVSSI DESVDQFAYQ 120 TSVNIGGRVF KGILYDQGPH ESRYYFGESS SRQLQEPNLP SAGALTPGAL ASTSGAAESL 180 AHPSYPFPLT ASMSGTQLFL HPKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037177.1 | 1e-153 | PREDICTED: protein SHORT INTERNODES-like | ||||
Refseq | XP_011037178.1 | 1e-153 | PREDICTED: protein SHORT INTERNODES-like | ||||
Refseq | XP_011037179.1 | 1e-153 | PREDICTED: protein SHORT INTERNODES-like | ||||
Swissprot | Q9XGX0 | 2e-58 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A3N7ETW4 | 1e-149 | A0A3N7ETW4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s16770.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 6e-54 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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