PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001724.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 485aa    MW: 54133 Da    PI: 6.3097
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001724.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34181082101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++i+
   CCG001724.1  18 FLIKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFLKDQKHLLKNIH 105
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   CCG001724.1 106 RRK 108
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-3514107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3714107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5914107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEAGSSPSAA AGGGPAPFLI KTYDMVDDSS TDEIVSWSSN KNSFVVWNPP EFARLLLPTF  60
FKHNNFSSFI RQLNTYGFRK IDPEKWEFAN EDFLKDQKHL LKNIHRRKPI HSHSNPQGSL  120
VDQERAAYEE EIDKLSRDKA KLEGSILGLS QQRSSAKLHV EDLTKRIGTM QQRQEKLLSF  180
LEKAVQNPAF VEHLASKIES MDFSAYSKKR RLPQVDHSMP TAENSFVENH CSSRPESNVI  240
HQDFSNKLRL ELSPAVSDIN LISRSTQSSN EDGGSPQRKI SEGNPKDGPT RTSGFLSAPE  300
TLELSDTGTS YTFKVNPAVP RDLPASGSQA QHSLRANLTS NEEVDGLISC QLNLTLASSA  360
LQVNKNPYLA RMPPLRQEIV KSPESRFNES NKDSGMRVIQ NMNLGNEGTT LSSSQETPNN  420
NQVPASAPAR VNDGFWEQFL TERPGSSENE EASSNYRANS YDEQDERRLG FGVPRNAKNM  480
EQLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-22110712129Heat shock factor protein 1
5d5v_B9e-22110712129Heat shock factor protein 1
5d5v_D9e-22110712129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139830.0KP013983.1 Populus simonii heat shock transcription factor A5a (HsfA5a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012492.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-170HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A0N7DK210.0A0A0N7DK21_9ROSI; Heat shock transcription factor A5a
STRINGPOPTR_0017s08630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-173HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]