PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG001625.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 626aa MW: 71011.9 Da PI: 6.4727 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.6 | 1e-10 | 102 | 167 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskk.mrergferspkqCkekwenlnkrykkikegekkr 71 W+++evl L+++r++m++++ + We+ s++ ++e gf+rs+++ kek+e+ ++++ +++ +k+ CCG001625.1 102 WSNDEVLPLLRIRSSMDNWFPEF-----TWEHASSRnLAEAGFKRSAEKWKEKFEEESGYFNSNTDIYSKN 167 ********************998.....9**9876516************************999998875 PP | |||||||
2 | trihelix | 84.4 | 1.4e-26 | 478 | 564 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ + +g+ k+p We++s+ m e g++rs+k+Ck+kwen+nk+++k+k+ +kkr +s+t pyf+ql CCG001625.1 478 RWPRDEVLALINLRCSLYNNNEdkEGSVKAPVWERISQGMLELGYKRSAKRCKQKWENINKYFRKTKDASKKR-YINSRTSPYFHQLS 564 8*************9766655522789*********************************************8.677789******95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.903 | 100 | 154 | IPR017877 | Myb-like domain |
CDD | cd12203 | 8.70E-24 | 477 | 544 | No hit | No description |
Pfam | PF13837 | 6.1E-18 | 477 | 564 | No hit | No description |
PROSITE profile | PS50090 | 6.528 | 478 | 537 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 626 aa Download sequence Send to blast |
MFEGVADQFH QFIASRTTSL PLPSLSFPPL HGSSNTTNFP SFDPYTAAAA ITSQVPLQPN 60 LLHSLHQASP TNKNDEKQEN NLMAMNLKFE RERSIPEMVN PWSNDEVLPL LRIRSSMDNW 120 FPEFTWEHAS SRNLAEAGFK RSAEKWKEKF EEESGYFNSN TDIYSKNYRA SFSEFEEIYH 180 GDQNPDQQEA TAGEKKIRKP GEDEQQDKMG QNLEEETTIH QTVVNQSVED NDGKLEQFEK 240 SKRKKRKREK KFEMFKRICE DIVNKMMAQQ EEKHNKLLED IVKRDEENFA REEAWKKLEM 300 DRINKELELR AHEQALAGDR LDTLIKLLKK ITSGDSCAEI LGETSAPDLV KVPKCSNASN 360 SSSLLLAQNP NPASQTSSES QLETPTSSTT TLDHQKSTSM PAKTNTSCTE NQEPQNPSST 420 LAPNIPQEPM TSSTLALAPQ NPSSLNSHNS PSGPSSILPM YKVQAKSTSN DEDDIGKRWP 480 RDEVLALINL RCSLYNNNED KEGSVKAPVW ERISQGMLEL GYKRSAKRCK QKWENINKYF 540 RKTKDASKKR YINSRTSPYF HQLSTLYNHG TLAAPKNRSA SPENQSNLSE TRHSSSSSQN 600 GTSNSAMHVV EGEKNKVQVP PFDFEF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 241 | 247 | KRKKRKR |
2 | 242 | 247 | RKKRKR |
3 | 242 | 249 | RKKRKREK |
4 | 242 | 250 | RKKRKREKK |
5 | 243 | 250 | KKRKREKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032424.1 | 0.0 | PREDICTED: trihelix transcription factor GTL2-like isoform X1 | ||||
TrEMBL | A0A2K2ABY6 | 0.0 | A0A2K2ABY6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s03670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28300.1 | 2e-79 | Trihelix family protein |