PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG001397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 288aa MW: 30300.4 Da PI: 9.9072 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.2e-07 | 37 | 61 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H CCG001397.1 37 KSKPCTKFFSTAGCPFGESCHFLHH 61 7789********************6 PP | |||||||
2 | zf-CCCH | 24.3 | 5.4e-08 | 94 | 119 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + Ck+Gd+C+FaHg+ CCG001397.1 94 KSRLCKKYNSAEGCKFGDKCHFAHGE 119 679*********************96 PP | |||||||
3 | zf-CCCH | 34.5 | 3.5e-11 | 255 | 279 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G rC+FaHg CCG001397.1 255 YKTKLCDNFAK-GSCTFGQRCHFAHG 279 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.37 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.009 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-5 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-8 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-13 | 90 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-8 | 91 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.826 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-6 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 4.3E-10 | 161 | 231 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.67 | 162 | 226 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.8E-14 | 163 | 231 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 1.13E-12 | 163 | 231 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.43E-12 | 164 | 227 | No hit | No description |
Pfam | PF00013 | 5.6E-10 | 164 | 228 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-16 | 252 | 285 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-8 | 253 | 284 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-7 | 254 | 280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.014 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 255 | 279 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MMDTRKRGRP DFGTNGYGGF KKSKQEMDSL STGVGSKSKP CTKFFSTAGC PFGESCHFLH 60 HVPGGYKAVA QMVNLGPTVA LLPVPNSSAP SAVKSRLCKK YNSAEGCKFG DKCHFAHGEW 120 ELGKAFVPSH NDPHAAGSVP GRLGGRVEPS PPGPATSFGV FATTTRISVD ASLAGSIIGK 180 AGVHSKQICR QTGIKLSIKE HETNPNLKNI ELEGSLEQIA QASKMVEELV RVTSANAAAK 240 TSGGHGGHAN PGSNYKTKLC DNFAKGSCTF GQRCHFAHGA AELRKSSV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033221.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q69XQ3 | 2e-99 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | B9IHZ7 | 0.0 | B9IHZ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s04690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 6e-93 | C3H family protein |