PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001377.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 934aa MW: 104596 Da PI: 6.7323

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001377.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.7	9.6e-28	616	665	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isle+l++yF++++kdAA++L vc+T+LKriCRq+GI RWP+Rkik++ CCG001377.1 616 QTISLEVLRQYFAGSLKDAAQSLSVCPTTLKRICRQHGITRWPSRKIKKV 665 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	601	685	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-25	617	665	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.68E-18	838	925	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-19	841	921	No hit	No description
SMART	SM00666	1.5E-13	841	924	IPR000270	PB1 domain
PROSITE profile	PS51745	20.008	841	924	IPR000270	PB1 domain
Pfam	PF00564	4.1E-14	842	921	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MDEHSSSTPN STFGIFSGNP MNWDFMDEIL YQGWAENDGE FSFLQQGPAT SNVLYDHPSL 60 YIPFMGSNNL SIASNQQDYQ EETERHCHGN PPLDYPKSME LVQTEPQVED SVDTSTSLLH 120 TTGYRVEAAG LGFEWQMVPR VNPVTSFSVK ERAMQAIIYL KNCIQYKDSL IQIWLPVEKE 180 GKKVLATIDQ PYFVNPSCKS LASYRNVSTA YHFQVEGDAT FSVGFPGRVF LEKLPEWTPD 240 VSLFRSEEYP RKDHAIQHNI RGSLALPLFK QGSETCLGIV EIVTTSQKIT YRPELEDICK 300 ALKAVDLRSS EDFCSPGVKT CNGLNQVAVP EISEIVKSVC KTYGLPLALT WTLCSRQGKS 360 GRQQFAEKSG AFISTVDSAC FLADRDFSGF HMASFEQYIF LGQGIVGKAF TTQKQCFAND 420 VTCFSKKDYP LAHHAKIFGL HAAIAIPLRS IATGLVEFVL ELFLPIDCKD TEEQKKMWDL 480 LPIAIQQVCW SLQVVMDKGL DNGENQSFES SHSKQPSLDE SSWISRMVEA QKKSKSFCVT 540 WGYPKEPKEE FKMITHWDDS AVELDHKQVI SELGQLQQNS RPNSNTEGDG VSAFGRHLSF 600 GSRKTGKKRR TKTDIQTISL EVLRQYFAGS LKDAAQSLSV CPTTLKRICR QHGITRWPSR 660 KIKKVDHSLR KLQQVIDTVQ GAKGSIQIES FYSAFPELSS TKLSSPAPSS SFRTSDNSRH 720 FDSPPDDAIF SGTTSKSHSS PCSRSSCSST CCSARAQQHA ATVITGSSNE NGALPAETSN 780 GVLKRTSGSE LAEFYSLNNE GEPDFLLRPH IHKTRTINEQ IHQSLLETPP QFGQSRRGGD 840 VFRVKAIFGV EKVRLFLQPN WGLRDLQQEI GKCFKIDDFT GIGLKYMDDD GEWIRLNRDD 900 DLEECKETHK FCQSNTIKLS LYKYSTAFGS RGSC

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MDEHSSSTPN STFGIFSGNP MNWDFMDEIL YQGWAENDGE FSFLQQGPAT SNVLYDHPSL  60
YIPFMGSNNL SIASNQQDYQ EETERHCHGN PPLDYPKSME LVQTEPQVED SVDTSTSLLH  120
TTGYRVEAAG LGFEWQMVPR VNPVTSFSVK ERAMQAIIYL KNCIQYKDSL IQIWLPVEKE  180
GKKVLATIDQ PYFVNPSCKS LASYRNVSTA YHFQVEGDAT FSVGFPGRVF LEKLPEWTPD  240
VSLFRSEEYP RKDHAIQHNI RGSLALPLFK QGSETCLGIV EIVTTSQKIT YRPELEDICK  300
ALKAVDLRSS EDFCSPGVKT CNGLNQVAVP EISEIVKSVC KTYGLPLALT WTLCSRQGKS  360
GRQQFAEKSG AFISTVDSAC FLADRDFSGF HMASFEQYIF LGQGIVGKAF TTQKQCFAND  420
VTCFSKKDYP LAHHAKIFGL HAAIAIPLRS IATGLVEFVL ELFLPIDCKD TEEQKKMWDL  480
LPIAIQQVCW SLQVVMDKGL DNGENQSFES SHSKQPSLDE SSWISRMVEA QKKSKSFCVT  540
WGYPKEPKEE FKMITHWDDS AVELDHKQVI SELGQLQQNS RPNSNTEGDG VSAFGRHLSF  600
GSRKTGKKRR TKTDIQTISL EVLRQYFAGS LKDAAQSLSV CPTTLKRICR QHGITRWPSR  660
KIKKVDHSLR KLQQVIDTVQ GAKGSIQIES FYSAFPELSS TKLSSPAPSS SFRTSDNSRH  720
FDSPPDDAIF SGTTSKSHSS PCSRSSCSST CCSARAQQHA ATVITGSSNE NGALPAETSN  780
GVLKRTSGSE LAEFYSLNNE GEPDFLLRPH IHKTRTINEQ IHQSLLETPP QFGQSRRGGD  840
VFRVKAIFGV EKVRLFLQPN WGLRDLQQEI GKCFKIDDFT GIGLKYMDDD GEWIRLNRDD  900
DLEECKETHK FCQSNTIKLS LYKYSTAFGS RGSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	606	611	KKRRTK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011033170.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_011033171.1	0.0	PREDICTED: protein NLP2-like
TrEMBL	B9IHW6	0.0	B9IHW6_POPTR; Uncharacterized protein
STRING	POPTR_0016s04220.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein