PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001341.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 294aa    MW: 32357 Da    PI: 4.7497
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001341.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36311212101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i++d+++++++sw+e+g+sf+v+d++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k+ll +i+
   CCG001341.1  31 FLTKTYQIVDDHTIDDVVSWNEDGSSFIVWDPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNENFRRGEKNLLANIQ 118
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   CCG001341.1 119 RRK 121
                   *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-5627120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3828120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.49E-3528120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-3331120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-203154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSPPPLVEQN STDTPTTGGG GETSRTIPTP FLTKTYQIVD DHTIDDVVSW NEDGSSFIVW  60
DPTVFARDLL PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FSNENFRRGE KNLLANIQRR  120
KIPAVVTAPV AVVPAMVKTS SNSSSDEQVI SGSSSPGLSV DLIDENERLR KENVQLKGEL  180
TEMKSLCANI FSLVSNYANS REGKGVKKML DLLPKKEEEQ EGARIFGVEV GVKRGREGSG  240
DMEEGEGEED GMQLQLRQPG CGGGLKIETN GCQDGNSNGG GGDQDAPWLE QCHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2571207129Heat shock factor protein 1
5d5v_B5e-2571207129Heat shock factor protein 1
5d5v_D5e-2571207129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140050.0KP014005.1 Populus simonii heat shock transcription factor B2a1 (HsfB2a1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012366.10.0PREDICTED: heat stress transcription factor B-2a-like
RefseqXP_011030077.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-80HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0N7DMG20.0A0A0N7DMG2_9ROSI; Heat shock transcription factor B2a1
STRINGPOPTR_0012s13430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-73heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]