PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG001341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 294aa MW: 32357 Da PI: 4.7497 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.5 | 1.6e-36 | 31 | 121 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i++d+++++++sw+e+g+sf+v+d++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF++++F++g+k+ll +i+ CCG001341.1 31 FLTKTYQIVDDHTIDDVVSWNEDGSSFIVWDPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNENFRRGEKNLLANIQ 118 9*****************************************************************99.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k CCG001341.1 119 RRK 121 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.1E-56 | 27 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-38 | 28 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.49E-35 | 28 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.9E-33 | 31 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-20 | 31 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-20 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 70 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-20 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSPPPLVEQN STDTPTTGGG GETSRTIPTP FLTKTYQIVD DHTIDDVVSW NEDGSSFIVW 60 DPTVFARDLL PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FSNENFRRGE KNLLANIQRR 120 KIPAVVTAPV AVVPAMVKTS SNSSSDEQVI SGSSSPGLSV DLIDENERLR KENVQLKGEL 180 TEMKSLCANI FSLVSNYANS REGKGVKKML DLLPKKEEEQ EGARIFGVEV GVKRGREGSG 240 DMEEGEGEED GMQLQLRQPG CGGGLKIETN GCQDGNSNGG GGDQDAPWLE QCHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-25 | 7 | 120 | 7 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-25 | 7 | 120 | 7 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-25 | 7 | 120 | 7 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP014005 | 0.0 | KP014005.1 Populus simonii heat shock transcription factor B2a1 (HsfB2a1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012366.1 | 0.0 | PREDICTED: heat stress transcription factor B-2a-like | ||||
Refseq | XP_011030077.1 | 0.0 | PREDICTED: heat stress transcription factor B-2a | ||||
Swissprot | Q9SCW4 | 1e-80 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A0N7DMG2 | 0.0 | A0A0N7DMG2_9ROSI; Heat shock transcription factor B2a1 | ||||
STRING | POPTR_0012s13430.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 5e-73 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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