PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001272.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 350aa    MW: 37983.2 Da    PI: 5.9334
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001272.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.95e-09447441
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                 + C+ +++  ++lfC+ ++ +lC +C +++H        H +v+
  CCG001272.1  4 KLCDSCKSATATLFCRADSAFLCISCDSKIHAAnklasrHARVS 47
                 58*****************************6567777777665 PP
2zf-B_box29.61.4e-094791442
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  +C+ +e+ ++++ C+ +   lC +C   +H+       H++vp+
  CCG001272.1 47 SVCEVCEQAPAHFTCKADAAALCVTCDRDIHSAnplasrHERVPI 91
                 68*****************************66999999*99997 PP
3CCT70.34.7e-24287330144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  CCG001272.1 287 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 330
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011911.064148IPR000315B-box-type zinc finger
PfamPF006431.2E-6447IPR000315B-box-type zinc finger
CDDcd000219.82E-9548No hitNo description
PROSITE profilePS5011911.1634491IPR000315B-box-type zinc finger
PfamPF006436.4E-84791IPR000315B-box-type zinc finger
CDDcd000211.86E-94891No hitNo description
SMARTSM003361.6E-114991IPR000315B-box-type zinc finger
PfamPF062035.2E-18287329IPR010402CCT domain
PROSITE profilePS5101716.787287329IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCISCD SKIHAANKLA SRHARVSVCE VCEQAPAHFT  60
CKADAAALCV TCDRDIHSAN PLASRHERVP ITPFFDSSST VHSGGAAVNF LEDRYFDEVD  120
GGRGDVSREE AEAESWLLPN PGGGTTKGLD GMDLNTGQYV FGSEMDPYLD LDPYVDPKVE  180
VQEQNSSGTT DGVVPVQRNK IGFQAPALVN DNCCYELDFS TGSKSFGGGY GYNSLSHSVS  240
SSSLDVGVVP DGSGSTLTDI SNPYCSRSVS NGMESANQTV QLSAVDREAR VLRYREKRKN  300
RKFEKTIRYA SRKAYAETRP RIKGRFAKRT DTEVEVDRSS LYAFGVVPSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485090.0EF148509.1 Populus trichocarpa x Populus deltoides clone WS0131_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012138.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
RefseqXP_011044957.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
RefseqXP_011044958.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-132COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA9PJC40.0A9PJC4_9ROSI; Uncharacterized protein
STRINGPOPTR_0018s03110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-121CONSTANS-like 4