PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001250.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 246aa    MW: 27591.2 Da    PI: 6.6494
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001250.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.1e-16994147
                     TSSS-HHHHHHHHHHHHHTTTT........................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg........................................tWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEd ll ++v+++G g                                         W++Ia +++ gRt++++k++w++ 
      CCG001250.1  9 KGAWTEEEDILLRKCVEKYGEGrwcqiplkaadgdkkvaqrnyritelkaepkghavcadlaFWSLIAGRFP-GRTANDVKNYWNTN 94
                     79**********************************************************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.872456IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-18639IPR009057Homeodomain-like
SuperFamilySSF466892.77E-13691IPR009057Homeodomain-like
SMARTSM007171.2E-14897IPR001005SANT/Myb domain
PfamPF002493.6E-7935IPR001005SANT/Myb domain
CDDcd001674.20E-91195No hitNo description
PfamPF002497.1E-67295IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1878102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVSSFGVRKG AWTEEEDILL RKCVEKYGEG RWCQIPLKAA DGDKKVAQRN YRITELKAEP  60
KGHAVCADLA FWSLIAGRFP GRTANDVKNY WNTNLRKKVV SGTREAQTKP EPKAITKANI  120
IRPRPHKFKS SCWLGGKAIP FFNGGFQYGY DLCKPCTPSA LSPSNSIEVE SMWWESLLDD  180
KEINASNNTR CLGSGSEADH EHIESLFVED NAPEGILIAD VFCCEQGQHC WSDLSFDADL  240
WNLVNT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233940.0KP723394.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB transcription factor (MYB117) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006495.11e-155PREDICTED: transcription factor MYB113-like
TrEMBLA0A3N7G5361e-138A0A3N7G536_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14460.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-33myb domain protein 113