PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG001243.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 608aa MW: 66283.9 Da PI: 4.8546

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG001243.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	456	2.3e-139	236	599	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv++Ll+cAea+++++l+la+al +++ la+++ +m+++a+yf+eALa+r+++ ++ + ++ ++s s++l + f+e++P+lkf+h+ta CCG001243.1 236 LVHTLLACAEAIQQENLKLADALFKHIGVLAASQVGAMRKVATYFAEALARRIYK----IFPQDHCLDSS---YSDALEM--HFYETCPYLKFAHFTA 324 689*************************************************9....44333333333...5555444..5*********** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+dle e+L++ CCG001243.1 325 NQAILEAFANASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVEFEFRGFVASSLADLEAEMLDL 422 ********************************************************************************************** PP GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +p Ea+aVn+v++lhrlld+++ +++ vL +k ++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsle + + ++++ ++++ +lgr CCG001243.1 423 RPpeVEAVAVNSVFELHRLLDRPGGIDK----VLGSIKAMRPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSGVTPTSQDLVMSELYLGR 516 9999************99999998....*****************************************8887788899999**** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +i+nvvacega+r+erhetl++Wr r+++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+ CCG001243.1 517 QICNVVACEGADRVERHETLARWRTRFDSAGFNPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 599 ********************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	1.4E-35	46	111	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	4.3E-37	46	117	No hit	No description
PROSITE profile	PS50985	68.637	210	578	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-137	236	599	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MKRDHQETIG GAGNSMANKA ESSSSSMATG KGKLWVEDDQ DAGGMDELLA VLGYKIKSSE 60 MADVAQKLEQ LEMVLGSEDG ISHLASDTVH YNPSDLSGWV QSMLSELNNL PSTDLDSSTL 120 LSNNQDSNPS TMTSLDFPIN SQSKAFVDDS EYDLRAIPGV AAYPQREFDK SNERKRMKLT 180 LVGSNTAPTL AVNSIQSSNS SCTPSSPQAI MAVSGTLSEP TRPVVLIDSQ ETGVCLVHTL 240 LACAEAIQQE NLKLADALFK HIGVLAASQV GAMRKVATYF AEALARRIYK IFPQDHCLDS 300 SYSDALEMHF YETCPYLKFA HFTANQAILE AFANASRVHV IDFGLKQGMQ WPALMQALAL 360 RPGGPPAFRL TGIGPPQPDN TDALQQVGWK LAQLAQTIGV EFEFRGFVAS SLADLEAEML 420 DLRPPEVEAV AVNSVFELHR LLDRPGGIDK VLGSIKAMRP KIVTIVEQEA NHNGPVFLDR 480 FTEALHYYSS LFDSLEGSGV TPTSQDLVMS ELYLGRQICN VVACEGADRV ERHETLARWR 540 TRFDSAGFNP VHLGSNAFKQ ASMLLALFAG GDGYRVEENN GCLMLGWHTR PLIATSAWQL 600 AAEDSRLR

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MKRDHQETIG GAGNSMANKA ESSSSSMATG KGKLWVEDDQ DAGGMDELLA VLGYKIKSSE  60
MADVAQKLEQ LEMVLGSEDG ISHLASDTVH YNPSDLSGWV QSMLSELNNL PSTDLDSSTL  120
LSNNQDSNPS TMTSLDFPIN SQSKAFVDDS EYDLRAIPGV AAYPQREFDK SNERKRMKLT  180
LVGSNTAPTL AVNSIQSSNS SCTPSSPQAI MAVSGTLSEP TRPVVLIDSQ ETGVCLVHTL  240
LACAEAIQQE NLKLADALFK HIGVLAASQV GAMRKVATYF AEALARRIYK IFPQDHCLDS  300
SYSDALEMHF YETCPYLKFA HFTANQAILE AFANASRVHV IDFGLKQGMQ WPALMQALAL  360
RPGGPPAFRL TGIGPPQPDN TDALQQVGWK LAQLAQTIGV EFEFRGFVAS SLADLEAEML  420
DLRPPEVEAV AVNSVFELHR LLDRPGGIDK VLGSIKAMRP KIVTIVEQEA NHNGPVFLDR  480
FTEALHYYSS LFDSLEGSGV TPTSQDLVMS ELYLGRQICN VVACEGADRV ERHETLARWR  540
TRFDSAGFNP VHLGSNAFKQ ASMLLALFAG GDGYRVEENN GCLMLGWHTR PLIATSAWQL  600
AAEDSRLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-70	243	598	26	378	Protein SCARECROW
5b3h_A	7e-70	220	598	2	377	Protein SCARECROW
5b3h_D	7e-70	220	598	2	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021384.1	0.0	PREDICTED: DELLA protein GAI-like
Swissprot	Q84TQ7	0.0	GAI_GOSHI; DELLA protein GAI
TrEMBL	U5GFQ3	0.0	U5GFQ3_POPTR; Uncharacterized protein
STRING	POPTR_0005s14540.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF803	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	0.0	GRAS family protein