PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001199.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 333aa    MW: 36859.2 Da    PI: 8.286
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001199.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.5e-13258283126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++tGtC+y ++C+FaHg
  CCG001199.1 258 WKTELCNKWQETGTCPYDNNCQFAHG 283
                  8************************8 PP
2zf-CCCH231.4e-07296321126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt  Cr  +++G C+yG rC+F H+
  CCG001199.1 296 YKTQACRMVLAGGVCPYGHRCHFRHS 321
                  9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.5E-18254290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-11254289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314257285IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7257284IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10258283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-12291324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-9291325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272295323IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5295322IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-5296321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEITQPPPSG SKPATQTAAQ SPPFDYHQPN DQDQFASNFT SLYLSIFPPK PLLLPNSLSF  60
TPSTTASPTS SSADEIATEN RLRQARLILE YQDLCDHYNV SLSRLQTLTN ELELIRQENA  120
DLRVTNSELL KLINLSSQAA AMQHQGRAFG ISRDVAIERR NSVHNVERER VTLPKSISVR  180
SSGYVKVNQA VSGNVSTNGG SRDGASSNSS RSRVASQLDQ LVSGSMQQRV YVPGGGGKRS  240
EEEIAAGMEL EVFNQGMWKT ELCNKWQETG TCPYDNNCQF AHGIGELRPV IRHPRYKTQA  300
CRMVLAGGVC PYGHRCHFRH SLTDQDRLLL GPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22258321467Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090420.0AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021302.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X2
TrEMBLA0A2I4KL090.0A0A2I4KL09_POPTR; C3H family protein
STRINGPOPTR_0005s15100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-76C3H family protein