PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001135.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 374aa    MW: 42286.6 Da    PI: 9.7738
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001135.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP149.71.9e-46962292134
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssgkaaksa 94 
                  ++kkdrhski+T++g+RdRRvRls+e+a++fFdLq++LGfdk+skt+eWLl+++k ai el+++      ss++++ce +s+s       +++  +++
  CCG001135.1  96 PVKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQEMLGFDKASKTLEWLLTKSKNAIEELAKNggekcLSSTSTNCEVVSKSWDL----EDRVPSES 189
                  68**************************************************************8776633333346444444444....45555555 PP

          TCP  95 akskksqksaasalnlakesrakarararertrekmrikn 134
                  +k++ ++ ++ ++  lakesrakar+rarertr km+++ 
  CCG001135.1 190 QKQRMKKMQNIAVDLLAKESRAKARERARERTRVKMCTRR 229
                  566666666666789999*******************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-4197227IPR005333Transcription factor, TCP
PROSITE profilePS5136936.12298156IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.241207224IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MFSSTSSTIH LFQSLSSSAF NPPPYITDHE TTDIFHQHHH HIDPLTIPSV STNPLPVTET  60
VMNMAASNNS MMSEQDVTAL DGELYNRSHF LSGKKPVKKD RHSKIYTAQG LRDRRVRLSI  120
EIARKFFDLQ EMLGFDKASK TLEWLLTKSK NAIEELAKNG GEKCLSSTST NCEVVSKSWD  180
LEDRVPSESQ KQRMKKMQNI AVDLLAKESR AKARERARER TRVKMCTRRL LETKKCPDFS  240
CLKQPSPLNQ HQSWEKSSSY NGTSSMKVVA RGQVEDPSSH HSLANHSTKG NIFEESTVMR  300
RKLRPSATTG YQQNLLMLKD ASCNNNDNSN YLPNLAQNWD ISSAIAHSSF RTFTTMNPST  360
EMQLNGKLWG TGNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-14103156154Putative transcription factor PCF6
5zkt_B4e-14103156154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021200.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A2K1X6G00.0A0A2K1X6G0_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13980.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-28TCP family protein