PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000826.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 742aa MW: 81605.8 Da PI: 5.551 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 126 | 148 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C Gd+C F+Hgp CCG000826.1 126 VPCIFFQQ-GICVKGDKCAFSHGP 148 69******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.803 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.0E-11 | 32 | 86 | No hit | No description |
PROSITE profile | PS50103 | 10.615 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.055 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.0E-5 | 122 | 148 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.521 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 123 | 147 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 123 | 148 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 126 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MVAATQPQQH PSTAAASTTT ANATSVEDEA LKRNTDCVYF LASPLTCKKG SECEYRHSEY 60 ARVNPRDCYF WLNGNCLNPK CGFRHPPLDG LFGTQAIASA GSSLPPSHAA VASATHAPHN 120 PGKQAVPCIF FQQGICVKGD KCAFSHGPNL AGNKVSQPMA PTPGAEALPP KKAFGGLQKC 180 TQEHKIPQTK ISKAVEAPSV AKPVSKAEIV HARNIAGVVR SAVPPKSMDG EIPRYKAANL 240 PLMVNGNLSR SSRLHQLEVA DDHVIQNGKD ADEYLRESSP GFDVLVDNEL RDSDYYHGEE 300 QLGRTTGNEG RNLNSVDEYG TGHSADYGLL HDDQEMYCDP QGYDSYELMP GQHAWEQHRA 360 SSERMLMAPV LPERRGYLKA DSPEHTEESD LRYRLSKQRR VNGLRSVVSN DFVPENHVEE 420 RGYRGSSRRD SHHLPSHESS ISSRLRGRIK LPGRSPNNGG DVRAEREIDR GRNRGRLSPV 480 RSPVTSQQGR LRERMKARVE EDYNEGRSFR GPQVRGELMD DRSSNFAGPK SLAELKGGKN 540 AEGKLQQSLG KRKHAEDNPS SDADLSFEGP MPLSEILKRK REGGAAASGG GISSVIKDNN 600 NLKESRQSLI SNSNKKADAE MQSGISSVSK DDNSTQMLKN KEESKLATDG AIGTEKNIEI 660 AHSQSSQLPN PSEIETEDGM MADDGMEDHE YEGDDQRDEN YEYEQVDEGE YNYEEGENID 720 GEEEYEDEDG EDFAKKIGVV IS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025269.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A2K1ZH60 | 0.0 | A0A2K1ZH60_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s14320.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9227 | 31 | 37 |