PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000725.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 602aa MW: 66197.6 Da PI: 5.5294 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 465.6 | 2.8e-142 | 234 | 591 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+lL++cAeav++++++la++l++++ la +++ m+++a+yf+eALa+r+++ l p+++++++ s+ l++ f+e++P+lkf+h+ta CCG000725.1 234 LVHLLMACAEAVQESNFTLAETLVKQIGFLAVSQAGVMRKVATYFAEALARRIYK--------LCPRNSTDHSLSDILQI--HFYETCPYLKFAHFTA 321 68*****************************************************........66777776667777666..4*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L++ CCG000725.1 322 NQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAHDNTDHLQEVGWKLAQLAEAIHVEFEYRGFVANSLADLDASMLEL 419 ************************************************************************************************** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +p E++aVn+v++lh+ll++++++e+ vL++vk+++P++v+vveqea+hn++ Fl+rf+e+l+yys+lfdsle ++ s +++++++e+lg++i CCG000725.1 420 RPTESVAVNSVFELHKLLSRPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPIFLDRFTESLHYYSTLFDSLEGSV---STQDKMMSEEYLGKQI 510 ******************99999999....************************************************7...88999999999***** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +nvvaceg +r+erhetl +Wr rl++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr CCG000725.1 511 CNVVACEGPDRVERHETLTQWRTRLGSAGFAPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWR 591 ********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 4.1E-37 | 56 | 129 | No hit | No description |
Pfam | PF12041 | 1.4E-36 | 56 | 122 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 68.637 | 208 | 570 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.8E-140 | 234 | 591 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042176 | Biological Process | regulation of protein catabolic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MKREHPNLHP QQISDPSSLA AAGYYTSTSS SAMAPNNGKA KIWAEGEGHQ ADGGMDELLA 60 VLGYKVRSSD MAEVAQKLEQ LEEVMGHAQE DGLSHLASDS VHYNPSDLST WLESMISELN 120 PNLNFDPSAD SLLAPAESST ITSIDFSDHK HHQQQKLFEE SSSSDYDLKV IPGKAVFPQT 180 QIDSRESKRL KTDLYQTSSS SSLSSATTLG SFGISSESTR PVVLVDSQEN GIRLVHLLMA 240 CAEAVQESNF TLAETLVKQI GFLAVSQAGV MRKVATYFAE ALARRIYKLC PRNSTDHSLS 300 DILQIHFYET CPYLKFAHFT ANQAILEAFE GKKRVHVIDF SMNQGMQWPA LMQALALRPG 360 GPPAFRLTGI GPPAHDNTDH LQEVGWKLAQ LAEAIHVEFE YRGFVANSLA DLDASMLELR 420 PTESVAVNSV FELHKLLSRP GAIEKVLSVV KQMKPEIVTV VEQEANHNGP IFLDRFTESL 480 HYYSTLFDSL EGSVSTQDKM MSEEYLGKQI CNVVACEGPD RVERHETLTQ WRTRLGSAGF 540 APVHLGSNAF KQASMLLALF AGGDGYRVEE NNGCLMLGWH TRPLIATSAW RLNTNQPVVG 600 AA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-69 | 229 | 590 | 14 | 378 | Protein SCARECROW |
5b3h_A | 2e-69 | 229 | 590 | 13 | 377 | Protein SCARECROW |
5b3h_D | 2e-69 | 229 | 590 | 13 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00611 | ChIP-seq | Transfer from AT2G01570 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX102471 | 0.0 | JX102471.1 Populus tomentosa DELLA domain GRAS family transcription factor GAI mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023720.1 | 0.0 | PREDICTED: DELLA protein GAIP-B-like | ||||
Swissprot | Q6EI05 | 0.0 | GAIPB_CUCMA; DELLA protein GAIP-B | ||||
TrEMBL | A0A2K1ZGG3 | 0.0 | A0A2K1ZGG3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s13090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF803 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 0.0 | GRAS family protein |