PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000725.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 602aa    MW: 66197.6 Da    PI: 5.5294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000725.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS465.62.8e-1422345911374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv+lL++cAeav++++++la++l++++  la +++  m+++a+yf+eALa+r+++        l p+++++++ s+ l++   f+e++P+lkf+h+ta
  CCG000725.1 234 LVHLLMACAEAVQESNFTLAETLVKQIGFLAVSQAGVMRKVATYFAEALARRIYK--------LCPRNSTDHSLSDILQI--HFYETCPYLKFAHFTA 321
                  68*****************************************************........66777776667777666..4*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L++
  CCG000725.1 322 NQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAHDNTDHLQEVGWKLAQLAEAIHVEFEYRGFVANSLADLDASMLEL 419
                  ************************************************************************************************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +p E++aVn+v++lh+ll++++++e+    vL++vk+++P++v+vveqea+hn++ Fl+rf+e+l+yys+lfdsle ++   s +++++++e+lg++i
  CCG000725.1 420 RPTESVAVNSVFELHKLLSRPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPIFLDRFTESLHYYSTLFDSLEGSV---STQDKMMSEEYLGKQI 510
                  ******************99999999....************************************************7...88999999999***** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +nvvaceg +r+erhetl +Wr rl++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  CCG000725.1 511 CNVVACEGPDRVERHETLTQWRTRLGSAGFAPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWR 591
                  ********************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.1E-3756129No hitNo description
PfamPF120411.4E-3656122IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.637208570IPR005202Transcription factor GRAS
PfamPF035149.8E-140234591IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKREHPNLHP QQISDPSSLA AAGYYTSTSS SAMAPNNGKA KIWAEGEGHQ ADGGMDELLA  60
VLGYKVRSSD MAEVAQKLEQ LEEVMGHAQE DGLSHLASDS VHYNPSDLST WLESMISELN  120
PNLNFDPSAD SLLAPAESST ITSIDFSDHK HHQQQKLFEE SSSSDYDLKV IPGKAVFPQT  180
QIDSRESKRL KTDLYQTSSS SSLSSATTLG SFGISSESTR PVVLVDSQEN GIRLVHLLMA  240
CAEAVQESNF TLAETLVKQI GFLAVSQAGV MRKVATYFAE ALARRIYKLC PRNSTDHSLS  300
DILQIHFYET CPYLKFAHFT ANQAILEAFE GKKRVHVIDF SMNQGMQWPA LMQALALRPG  360
GPPAFRLTGI GPPAHDNTDH LQEVGWKLAQ LAEAIHVEFE YRGFVANSLA DLDASMLELR  420
PTESVAVNSV FELHKLLSRP GAIEKVLSVV KQMKPEIVTV VEQEANHNGP IFLDRFTESL  480
HYYSTLFDSL EGSVSTQDKM MSEEYLGKQI CNVVACEGPD RVERHETLTQ WRTRLGSAGF  540
APVHLGSNAF KQASMLLALF AGGDGYRVEE NNGCLMLGWH TRPLIATSAW RLNTNQPVVG  600
AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6922959014378Protein SCARECROW
5b3h_A2e-6922959013377Protein SCARECROW
5b3h_D2e-6922959013377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1024710.0JX102471.1 Populus tomentosa DELLA domain GRAS family transcription factor GAI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023720.10.0PREDICTED: DELLA protein GAIP-B-like
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLA0A2K1ZGG30.0A0A2K1ZGG3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s13090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein