PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WOX | ||||||||
Protein Properties | Length: 297aa MW: 33674.4 Da PI: 6.9888 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 2e-21 | 67 | 126 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee ++ +r+p++++++++A++l +++ ++V++WFqN++ake++ CCG000712.1 67 SRWNPTAEQLLALEEKYRCgTRTPTTDQIQQIASELrrfgKIEGKNVFYWFQNHKAKERQ 126 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 104.5 | 6.9e-34 | 67 | 128 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQ+ Lee y++G+rtP++++iq+i++eL+++Gkie+kNVfyWFQN+ka+erqk+ CCG000712.1 67 SRWNPTAEQLLALEEKYRCGTRTPTTDQIQQIASELRRFGKIEGKNVFYWFQNHKAKERQKR 128 8***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.9E-6 | 64 | 131 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-12 | 66 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.4E-19 | 67 | 126 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-9 | 67 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.29E-6 | 68 | 128 | No hit | No description |
PROSITE profile | PS50071 | 11.175 | 72 | 127 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MMNGGDTNEP IMNDIFNPEP DTTTLCTDIT ATPSPYVGLK HHLAKTSCDQ QSSGREFKEQ 60 VEIMGGSRWN PTAEQLLALE EKYRCGTRTP TTDQIQQIAS ELRRFGKIEG KNVFYWFQNH 120 KAKERQKRRL CQVQQKHNNS DHESLSKLMK ESETKRTVHG LDQTKNLVTH SNCRASSVHG 180 AEIAESGTNG WSEFEEKELH QMKSSSLDMH AMRHTIDLSS SPPVHHFKST MTTTTSKFLS 240 LEEHSSLLRP SKRESHANHI HDDEIREVQA LQLFPLCSDN SNGANSTEKD KQYPSGP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314802.1 | 1e-141 | WUSCHEL-related homeobox 6 | ||||
TrEMBL | B9HW56 | 1e-140 | B9HW56_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s12150.1 | 1e-140 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 3e-31 | WUSCHEL related homeobox 1 |