PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000712.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WOX
Protein Properties Length: 297aa    MW: 33674.4 Da    PI: 6.9888
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000712.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32e-2167126357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql +Lee ++  +r+p++++++++A++l    +++ ++V++WFqN++ake++
  CCG000712.1  67 SRWNPTAEQLLALEEKYRCgTRTPTTDQIQQIASELrrfgKIEGKNVFYWFQNHKAKERQ 126
                  6*****************99**************************************97 PP

2Wus_type_Homeobox104.56.9e-3467128465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +RW+Pt+eQ+  Lee y++G+rtP++++iq+i++eL+++Gkie+kNVfyWFQN+ka+erqk+
        CCG000712.1  67 SRWNPTAEQLLALEEKYRCGTRTPTTDQIQQIASELRRFGKIEGKNVFYWFQNHKAKERQKR 128
                        8***********************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.9E-664131IPR001356Homeobox domain
SuperFamilySSF466891.45E-1266132IPR009057Homeodomain-like
PfamPF000466.4E-1967126IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-967126IPR009057Homeodomain-like
CDDcd000862.29E-668128No hitNo description
PROSITE profilePS5007111.17572127IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMNGGDTNEP IMNDIFNPEP DTTTLCTDIT ATPSPYVGLK HHLAKTSCDQ QSSGREFKEQ  60
VEIMGGSRWN PTAEQLLALE EKYRCGTRTP TTDQIQQIAS ELRRFGKIEG KNVFYWFQNH  120
KAKERQKRRL CQVQQKHNNS DHESLSKLMK ESETKRTVHG LDQTKNLVTH SNCRASSVHG  180
AEIAESGTNG WSEFEEKELH QMKSSSLDMH AMRHTIDLSS SPPVHHFKST MTTTTSKFLS  240
LEEHSSLLRP SKRESHANHI HDDEIREVQA LQLFPLCSDN SNGANSTEKD KQYPSGP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314802.11e-141WUSCHEL-related homeobox 6
TrEMBLB9HW561e-140B9HW56_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12150.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-31WUSCHEL related homeobox 1