PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG000586.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 426aa MW: 48100.5 Da PI: 6.91 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 146.9 | 1.4e-45 | 117 | 246 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec...eaesssssasnsssgkaaksa 94 ++kdrhskihT++g+RdRR+Rls+++ ++fFdLqd+LGfdk+sktieWL++++k+ ikelt++ + ++c +++ ss+ + ++ + CCG000586.1 117 TGKDRHSKIHTAQGPRDRRMRLSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSvpgG---RRRCsicADGKTISSTP-----EMSNPK 206 68*************************************************************5442...44443225666666665.....333333 PP TCP 95 akskksqksaasalnlak.esrakarararertrekmriknk 135 +k++k+ +++ nl + +sr+karararertre+m+++ CCG000586.1 207 EKRSKKVHKPI--FNLVDrDSREKARARARERTRERMKNQGI 246 45555666665..888777*******************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.7E-37 | 117 | 243 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.525 | 118 | 176 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.374 | 223 | 240 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 426 aa Download sequence Send to blast |
MFSSSSSFNP FDQYANHTMI ASTENPSSIE SCSQTFLQHF PHPFFDVDDL LVGELLSQQQ 60 QQQEEEEEVL GSNTALAVEA HDPQTIPTAS NEETKINNKK KKSNVDTSKQ PIRQRRTGKD 120 RHSKIHTAQG PRDRRMRLSL QISRKFFDLQ DMLGFDKASK TIEWLFTKSK AGIKELTDSV 180 PGGRRRCSIC ADGKTISSTP EMSNPKEKRS KKVHKPIFNL VDRDSREKAR ARARERTRER 240 MKNQGIDTSS DRSSQANPNK LEKLFESSSP LEYGENLASV NQEMSSPVKV GDVKESSNHD 300 LLPHQMDYVS ITGNFFWVPS SPRSPSIPDF SESVALPGGT NCKDEFLPLN SDMTNDRIQY 360 KYNALTNMKL PTLNAHEESP NSIFMNMPNP NDQNSISILM TTTTNGNANQ SSSNFFLAED 420 HFECLY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 229 | 241 | RARARERTRERMK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY012515 | 0.0 | AY012515.1 Populus x canescens teosinte-branched-like protein 1 (TB1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312378.2 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | Q9FUE7 | 0.0 | Q9FUE7_POPDE; Teosinte-branched-like protein | ||||
STRING | POPTR_0008s11470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-31 | TCP domain protein 12 |