PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000557.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 329aa MW: 36536.7 Da PI: 6.4286

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000557.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.2	4e-15	51	100	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++e++++Lq CCG000557.1 51 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEFVQHLQ 100 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-18	47	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-21	47	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.51	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.92E-14	51	104	No hit	No description
Pfam	PF00010	1.5E-12	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-11	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MRGKGNQNQV EEEYEEDEFG SRKDGPSSSF TVNNNNSSKD GKNNDRANAI RSKHSVTEQR 60 RRSKINERFQ ILRDLIPHSD QKRDTASFLL EVIEFVQHLQ EKVQKYEGPY QGWSPEPAKL 120 MPWRNSHWRL QSSVGHPQAI KNGYVPGETF PGKLDENNIA LTPAMLPSTP NLVESDHVAC 180 KVLEFQPELA NKVMPLPTPA PIRSVGLVAQ PCQQPVTDAQ SAECPITSEM LNQQELAIEA 240 GTIKISSVYS QELLNTLTQS LQSAGVDLSQ ANISVQIDLG KRANRGLTSG TLTSKDPQNP 300 HPTNEMINHP RDTSGGEDSD QAHKRLKTS

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011021046.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
Swissprot	Q9CAA4	1e-109	BIM2_ARATH; Transcription factor BIM2
TrEMBL	B9HIU8	0.0	B9HIU8_POPTR; Uncharacterized protein
STRING	POPTR_0008s11120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	5e-99	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]