PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000437.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27770.7 Da    PI: 7.5671
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000437.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  CCG000437.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                 79***********************************************96 PP
2K-box89.18.4e-30781724100
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++ ++++   + +++ e+++Lk+++e Lqr++Rh+lGedL+s slkeLq+Leqq++++lk iR++Kn+l++++i+elq+k  +++e+n++L k+++e
  CCG000437.1  78 RQLVATDLDSQGNWTLEYNRLKEKVELLQRNHRHYLGEDLDSVSLKELQNLEQQIDTALKLIRERKNHLMYQSISELQEK--AIKEQNNMLVKQIKE 172
                  5555555566789****************************************************************976..688999*****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.156161IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-41160IPR002100Transcription factor, MADS-box
CDDcd002656.62E-41279No hitNo description
SuperFamilySSF554555.89E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-2486170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.23188176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
ACMEKILERH ERYSYAERQL VATDLDSQGN WTLEYNRLKE KVELLQRNHR HYLGEDLDSV  120
SLKELQNLEQ QIDTALKLIR ERKNHLMYQS ISELQEKAIK EQNNMLVKQI KEKEKALAQP  180
ARWDQQDHGP NASSFLLPQP PLPCLNISYQ EEDPEARRNE LDLTLEPVYS CHFGCLGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21185184MEF2 CHIMERA
6byy_B1e-21185184MEF2 CHIMERA
6byy_C1e-21185184MEF2 CHIMERA
6byy_D1e-21185184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6159640.0AY615964.1 Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018990.11e-165PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_011018998.11e-165PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-134AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLS5PTH21e-157S5PTH2_9ROSI; APETALA1-like MADS-box AP1-1
STRINGcassava4.1_029935m1e-144(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]