PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000361.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MIKC_MADS

Protein Properties

Length: 379aa MW: 42210.8 Da PI: 7.6922

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000361.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.8	8.8e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk CCG000361.1 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP
2	K-box	13.3	3.4e-06	146	177	47	78
K-box 47 slkeLqqLeqqLekslkkiRskKnellleqie 78 sl++L qLe+ L +sl++iRs+K++l ++++ CCG000361.1 146 SLEHLGQLESSLRESLNRIRSHKEHLGKQHLM 177 5789********************99777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.563	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.6E-27	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.06E-24	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.52E-26	2	82	No hit	No description
PRINTS	PR00404	3.5E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCKGA 60 SSSIEEVITK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIPEFLGTS SQTIEDLTSQ 120 SRLLQNQLSD VHKRLSYWTN PDKISSLEHL GQLESSLRES LNRIRSHKEH LGKQHLMSLE 180 CHSQFQNAMH VPFRMGVEQQ LPPISWIPNN DTQHIMLPED PNLLPHRDAE CSATTSFGSY 240 SGYFGAGKNS ELSSSGQESG MNGILDEFNG TASLRLQMAG QYPYLPGSYN LNLLNDTKFQ 300 PAAEMKIQKS PEDFHVNGSF EAPKPGYDST PCGWASTPGS CAVTMFDDHL YSQVEGGRSG 360 NLLKSMQHAS HDSSHIPIP

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCKGA  60
SSSIEEVITK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIPEFLGTS SQTIEDLTSQ  120
SRLLQNQLSD VHKRLSYWTN PDKISSLEHL GQLESSLRES LNRIRSHKEH LGKQHLMSLE  180
CHSQFQNAMH VPFRMGVEQQ LPPISWIPNN DTQHIMLPED PNLLPHRDAE CSATTSFGSY  240
SGYFGAGKNS ELSSSGQESG MNGILDEFNG TASLRLQMAG QYPYLPGSYN LNLLNDTKFQ  300
PAAEMKIQKS PEDFHVNGSF EAPKPGYDST PCGWASTPGS CAVTMFDDHL YSQVEGGRSG  360
NLLKSMQHAS HDSSHIPIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-14	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-14	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-14	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-14	1	92	1	90	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017371.1	0.0	PREDICTED: MADS-box protein CMB1-like isoform X4
Swissprot	Q1PFA4	1e-123	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	B9HI83	0.0	B9HI83_POPTR; Uncharacterized protein
STRING	POPTR_0008s08780.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-103	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]