PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000356.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 500aa MW: 54215.5 Da PI: 6.9455

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000356.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	142	202	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss CCG000356.1 142 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSSS 202 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	140	199	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	144	200	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	146	200	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	148	184	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MSDLAIKLFG KTIPLQVNQQ EDVCCAANKY ESSSGTPPES EDCYDNTATA TSSHENHNSH 60 EERGEQEGNN NRETSGEEIC NDKQEDVTSN QINKDSKGPT SSGISENLKT PSAERETSSL 120 KSSKDEEQSE TSISQEKTPK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKKCQRYW 180 TAGGTMRNVP VGAGRRKNKS SSASHYRHLM VSEALRTAQV HAMNGFHNPS LGNNGTVLTF 240 GSDSPLCESV ASVLNLSEKT QNSVRNGYRR PEHRILVSCG GTGGDGDDHS SVSSATASNS 300 SDKGCNGTSR EAVNKDYQSF PPQAPCFPGP PWPYPWNSAI TPPTFCPSGF PVSFFPAPAY 360 WGCAVPSPWN VPPCASSPSA TLNHRTQSSS PTFPLGKHSR DGNILNPTCL EEPSRDGTKS 420 ETGVLVPKTL RIDDPSEAAK SSIWATLGIT NEKSSSINGG GLFKGFQSKN EDRNYMAGTT 480 SVLQANPAAF SRSLNFHENT

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MSDLAIKLFG KTIPLQVNQQ EDVCCAANKY ESSSGTPPES EDCYDNTATA TSSHENHNSH  60
EERGEQEGNN NRETSGEEIC NDKQEDVTSN QINKDSKGPT SSGISENLKT PSAERETSSL  120
KSSKDEEQSE TSISQEKTPK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKKCQRYW  180
TAGGTMRNVP VGAGRRKNKS SSASHYRHLM VSEALRTAQV HAMNGFHNPS LGNNGTVLTF  240
GSDSPLCESV ASVLNLSEKT QNSVRNGYRR PEHRILVSCG GTGGDGDDHS SVSSATASNS  300
SDKGCNGTSR EAVNKDYQSF PPQAPCFPGP PWPYPWNSAI TPPTFCPSGF PVSFFPAPAY  360
WGCAVPSPWN VPPCASSPSA TLNHRTQSSS PTFPLGKHSR DGNILNPTCL EEPSRDGTKS  420
ETGVLVPKTL RIDDPSEAAK SSIWATLGIT NEKSSSINGG GLFKGFQSKN EDRNYMAGTT  480
SVLQANPAAF SRSLNFHENT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017304.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A2K1ZE60	0.0	A0A2K1ZE60_POPTR; Uncharacterized protein
STRING	POPTR_0008s08740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	5e-75	cycling DOF factor 3