PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000343.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 322aa    MW: 35455.5 Da    PI: 8.6439
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000343.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.11.6e-3156111357
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                   v Y+eClkNhAa  Gg a+DGCgEfmp+++++  ++++lkCaACgCHRnFHR e+
  CCG000343.1  56 VVSYRECLKNHAAGFGGLALDGCGEFMPKPTTTpQDPTSLKCAACGCHRNFHRSEP 111
                  689****************************9999******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-2657110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1957111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.81959110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-2959110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.48E-15182251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-25182251IPR009057Homeodomain-like
TIGRFAMsTIGR015653.4E-25189246IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDLTSSPHHS TKSPDSDTDT ETPLQTHLTK ALSLTKGSGK TRQNHHFPPP PQQHMVVSYR  60
ECLKNHAAGF GGLALDGCGE FMPKPTTTPQ DPTSLKCAAC GCHRNFHRSE PFGPTTTTRM  120
PPRPALNWTT SPCPGSTSSG PTLSPASPIP KSFYPSAPHM LLALRAGHPD DTQPQKQCQS  180
LVMIDPHGKK RARTKFSQEQ KEKMYLFAEK LGWRMPRGNN DRDVGEFCVE IGVNRNVFKV  240
WMHNNRSRKE KVSDSYGINS SNKCGFDVNE EAAGRVIGTD NKGYSFDNDN NGSSHDSFDR  300
YQIESKVHVD GSMTPHGSSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-161902471874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017078.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ15e-55ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A1L6K4L70.0A0A1L6K4L7_POPTO; Uncharacterized protein
STRINGPOPTR_0008s08560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-51zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]