PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000301.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 541aa    MW: 58970.2 Da    PI: 8.0495
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000301.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.2e-11156180226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++ t tCk+Gd+CkF H+
  CCG000301.2 156 GEKDCAYYMLTRTCKFGDTCKFDHP 180
                  7889********************9 PP
2zf-CCCH35.81.3e-11207233127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ + C++f++t  CkyG +CkF+H++
  CCG000301.2 207 PGVPDCPYFLKTQRCKYGVNCKFNHPK 233
                  5789*********************96 PP
3zf-CCCH40.54.4e-13255279327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C f+++tG+Ck+G++CkF+H++
  CCG000301.2 255 EPPCAFYMKTGICKFGATCKFHHPK 279
                  79*********************96 PP
4zf-CCCH38.61.8e-12333359127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+f+++tG CkyG++C+++H++
  CCG000301.2 333 PGEVDCPFYLKTGSCKYGATCRYNHPE 359
                  57899********************96 PP
5zf-CCCH406.5e-13416440226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++ +C+f+++tG+Ck+G++CkF+H+
  CCG000301.2 416 GQTECDFYMKTGECKFGETCKFHHP 440
                  6789********************8 PP
6zf-CCCH40.16.2e-13502523627
                  -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                  C+++++tGtCkyG++CkF H+p
  CCG000301.2 502 CPYYMKTGTCKYGATCKFDHPP 523
                  ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-4154181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896154182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5155181IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9156180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4160179IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6206233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793206234IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5211236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5212234IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-7252279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441252280IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10255279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6256280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5257278IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554332360IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4338359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187414442IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6414441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6414443IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10416440IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5420440IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6496523IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6496523IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159496524IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5502521IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10502523IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MAKQLYGYGA PATTSASRSL TDSYLTDSVL TRYLGTGSDP LSSDSSKYSA SSSMYLTQSD  60
SALRYSVDRG IASSAAAATS PHLSSWPPPP GVDAPSAVDS LVPGLKRTPE VLYHPTLLGA  120
HSTIGQSEDW YSTNALAKRA RFETTSHLPI YPQRPGEKDC AYYMLTRTCK FGDTCKFDHP  180
VWVPEGGIPD WKEVPPIATS ETFPERPGVP DCPYFLKTQR CKYGVNCKFN HPKEKLALDV  240
SENTSVSALP ERPSEPPCAF YMKTGICKFG ATCKFHHPKD IQITLAGQGN DNGVQTNSVV  300
DNGGITGDVN VIKALMSVTP ALLHNSKGLP MRPGEVDCPF YLKTGSCKYG ATCRYNHPER  360
TAINPPAAAI SHPIIAPSMA NLNLGVFSPA ASIYQTIDPR LSTLGVGPTV YPQRPGQTEC  420
DFYMKTGECK FGETCKFHHP IDRSAPTAKQ TEPQTVKLTL AGLPRREVLG YDLLHVKHIK  480
VGLSSLLNFV EENICLWGAV HCPYYMKTGT CKYGATCKFD HPPPGEVMVF PNLKELLMQK  540
Q
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2320644e-59CU232064.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012050.10.0PREDICTED: zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1ZDR60.0A0A2K1ZDR6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)