PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000299.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 319aa MW: 36742.2 Da PI: 8.0453

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000299.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.5e-54	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k k+ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ + CCG000299.1 10 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLRdKcKIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLS 106 69**************************.9***********843444443456*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++ktLvfy+grap+g+ktdW+mheyrl CCG000299.1 107 NSQRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139 *****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-60	4	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.144	10	159	IPR003441	NAC domain
Pfam	PF02365	3.7E-28	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MMTGNGQLSV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIREVDLNKL EPWDLRDKCK 60 IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSNSQR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLD DDNSEVQEDG WVVCRVFKKK NQTRGFLPEV SQEVHFSHMK 180 TSSSSFPLDP KQNHLQSLYE DYTLDGSMHL PQLFSPDSAV APSFVSPLSL NNMNDIECSQ 240 NLLRLTPSGC GFVHPAGRFN GDWSFLDKLL ASHQNLDHQQ HYQNKRNSSS QIVDPVGTST 300 QKFPFQHLGF ETDILRFSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-53	7	164	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-53	7	164	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-53	7	164	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-53	7	164	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	9e-53	7	164	17	173	NAC domain-containing protein 19
3swm_B	9e-53	7	164	17	173	NAC domain-containing protein 19
3swm_C	9e-53	7	164	17	173	NAC domain-containing protein 19
3swm_D	9e-53	7	164	17	173	NAC domain-containing protein 19
3swp_A	9e-53	7	164	17	173	NAC domain-containing protein 19
3swp_B	9e-53	7	164	17	173	NAC domain-containing protein 19
3swp_C	9e-53	7	164	17	173	NAC domain-containing protein 19
3swp_D	9e-53	7	164	17	173	NAC domain-containing protein 19
4dul_A	9e-53	7	164	14	170	NAC domain-containing protein 19
4dul_B	9e-53	7	164	14	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011812.1	0.0	PREDICTED: protein SOMBRERO-like
Swissprot	Q9MA17	1e-123	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A385JHG1	0.0	A0A385JHG1_POPTO; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBL	B9HI11	0.0	B9HI11_POPTR; Uncharacterized protein
STRING	POPTR_0008s07950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7204	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-115	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]