PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000211.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 664aa    MW: 72212.8 Da    PI: 7.8471
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000211.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08251271526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ GtC+ Gd+C +aHg
  CCG000211.1 251 PCPEFRK-GTCQKGDSCEYAHG 271
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.3E-1442164IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.2E-1249139IPR020683Ankyrin repeat-containing domain
PfamPF127965.7E-857130IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00156191IPR002110Ankyrin repeat
PROSITE profilePS5029713.15161136IPR020683Ankyrin repeat-containing domain
CDDcd002041.73E-1263159No hitNo description
PROSITE profilePS500889.21796131IPR002110Ankyrin repeat
SMARTSM002480.0996128IPR002110Ankyrin repeat
SMARTSM003562.1E-5246272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666246273IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5251271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5251273IPR000571Zinc finger, CCCH-type
SMARTSM0035637281304IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869281305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEDKSYSQKD NLLYKCSVLL ELSASDDLAG FKIEVEQKGL DIDGATYWYG KRIGSKKMGF  60
EERTPLIIAA MFGSIHVLKY IIETGKVNVN RVCGSDKVTA LHCAVAGCAA SAVGIVKLLL  120
DASADPNSAD ANGNKPGDLF STSSKCMCNS RKKFIELLLK GQNLSEDEEE KLIIMPQLAK  180
EGAEKKEYPL DVTLPDINNG IYGTDEFRMY SFKVKPCSRA YSHDWTECPF VHPGENARRR  240
DPKKYPYSCV PCPEFRKGTC QKGDSCEYAH GVFESWLHPA QYRTRLCKDE TGCARKVCFF  300
AHKPEELRPV YASTGSAMPS PRSTSSAVDM TTLSPLALGS SSLPLPATST PPMSPLAVAS  360
SSPKSGGLWQ NKVSLTPPAL QLPGSRLKTA FCARDLNLEM ELLGLESYSS QLQQQQQQLR  420
DEMSCLSSPS HWSNRIADLK PNNLDDVFGS LDSSLMSPLQ GVSLNASAQT QLQSPNGMKI  480
RQNMNQLRSS YPAASLSSSS ARNPISYGFD TSAAVAAAVM NSRSSAFAKR SQSFIDRGAV  540
PNRLGFTAAA NSVSMMPSNL PDWSSPNGKL DWGIQGDELN KLKKSASFGF RSNNNPAATT  600
AANGTASHVG EPDVSWVNSL VKDAPPAGST FFGAEKQYTI GKGVRESLPP WMEQIYMEQE  660
QMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047835.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLU5G7L70.0U5G7L7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein