PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WOX | ||||||||
Protein Properties | Length: 514aa MW: 58759.2 Da PI: 8.1112 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 28 | 89 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t eq++ L +lF++ r+ps++e++ ++++l +++ ++V++WFqN++a+e++ CCG000179.1 28 KCGRWNPTIEQVKLLTDLFRSgVRTPSTDEIQNISARLsfygKIESKNVFYWFQNHKARERQ 89 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 108.8 | 3.1e-35 | 28 | 91 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt eQ+k+L++l++sG+rtP+++eiq+i+a+L+ yGkie+kNVfyWFQN+kaRerqk+ CCG000179.1 28 KCGRWNPTIEQVKLLTDLFRSGVRTPSTDEIQNISARLSFYGKIESKNVFYWFQNHKARERQKR 91 678***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.592 | 25 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-4 | 27 | 94 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.8E-16 | 29 | 89 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-10 | 30 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.07E-4 | 31 | 91 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-6 | 31 | 89 | IPR009057 | Homeodomain-like |
CDD | cd08062 | 0 | 222 | 499 | No hit | No description |
Pfam | PF01398 | 6.3E-30 | 222 | 331 | IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain |
SMART | SM00232 | 6.9E-28 | 223 | 357 | IPR000555 | JAB1/MPN/MOV34 metalloenzyme domain |
Pfam | PF13012 | 9.6E-36 | 379 | 488 | IPR024969 | Rpn11/EIF3F, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045087 | Biological Process | innate immune response | ||||
GO:0000502 | Cellular Component | proteasome complex | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MEERMSGFCT TKAGRGGSSG NNYASGTKCG RWNPTIEQVK LLTDLFRSGV RTPSTDEIQN 60 ISARLSFYGK IESKNVFYWF QNHKARERQK RRRVSVDEKD VMIIRDEKFS SARYFTEISP 120 VNEREQVIET LQLFPIKSFD EVESEKFRLQ ANECNEAAEM DRPQLDLREE NKKQNQLHTS 180 WENKRFPSEQ ALSSRRRVVQ FLGKKLRMDV IKTQQISARP IEKVIVHPLV LLSIVDNYNR 240 VAKDTRKRVV GVLLGSSFKG TVDVTNSYAV PFEEDDKDPS IWFLDHNYHE SMFSMFKRIN 300 AKEHVVGWYS TGPKLRENDL KIHGLFNDYV PNPVLVIIDV QPEELGIPTK AYYAVEENAT 360 QKSQKVFVHV PSEIAAHDVE EIGVEHLLRD VKDTTISTLA TEVTGKLAAL KGLDARLKEI 420 RGYLDLVIEG KLPLNHEILY HLQDVFNLLP NLNVADLIKA FAVKTNDMML VIYLSSLIRS 480 VIALHNLISN KMLNKEHEKA EDSKPIVVPS VAGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5vfp_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vfq_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vfr_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vfs_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vft_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vfu_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vgz_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vhf_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vhh_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vhi_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
5vhs_Z | 1e-114 | 221 | 501 | 2 | 285 | 26S proteasome non-ATPase regulatory subunit 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 93 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins (By similarity). Required for innate immunity. {ECO:0000250, ECO:0000269|PubMed:22577987}. | |||||
UniProt | Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145104 | 0.0 | EF145104.1 Populus trichocarpa clone WS01120_G13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312144.2 | 0.0 | 26S proteasome non-ATPase regulatory subunit 7 homolog A | ||||
Refseq | XP_011041662.1 | 0.0 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A | ||||
Refseq | XP_011041738.1 | 0.0 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A | ||||
Refseq | XP_011041815.1 | 0.0 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A | ||||
Refseq | XP_024462218.1 | 0.0 | 26S proteasome non-ATPase regulatory subunit 7 homolog A | ||||
Refseq | XP_024462219.1 | 0.0 | 26S proteasome non-ATPase regulatory subunit 7 homolog A | ||||
Refseq | XP_024462220.1 | 0.0 | 26S proteasome non-ATPase regulatory subunit 7 homolog A | ||||
Swissprot | O24412 | 0.0 | PSD7A_ARATH; 26S proteasome non-ATPase regulatory subunit 7 homolog A | ||||
Swissprot | Q9C774 | 0.0 | PSD7B_ARATH; 26S proteasome non-ATPase regulatory subunit 7 homolog B | ||||
TrEMBL | B9HHL6 | 0.0 | B9HHL6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s06550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11260.1 | 8e-51 | WUSCHEL related homeobox 5 |