PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000179.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WOX
Protein Properties Length: 514aa    MW: 58759.2 Da    PI: 8.1112
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000179.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-182889157
                 TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++ R+++t eq++ L +lF++  r+ps++e++ ++++l    +++ ++V++WFqN++a+e++
  CCG000179.1 28 KCGRWNPTIEQVKLLTDLFRSgVRTPSTDEIQNISARLsfygKIESKNVFYWFQNHKARERQ 89
                 568*****************99**************************************97 PP

2Wus_type_Homeobox108.83.1e-352891265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++ RW+Pt eQ+k+L++l++sG+rtP+++eiq+i+a+L+ yGkie+kNVfyWFQN+kaRerqk+
        CCG000179.1 28 KCGRWNPTIEQVKLLTDLFRSGVRTPSTDEIQNISARLSFYGKIESKNVFYWFQNHKARERQKR 91
                       678***********************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.5922590IPR001356Homeobox domain
SMARTSM003896.4E-42794IPR001356Homeobox domain
PfamPF000469.8E-162989IPR001356Homeobox domain
SuperFamilySSF466894.71E-103092IPR009057Homeodomain-like
CDDcd000863.07E-43191No hitNo description
Gene3DG3DSA:1.10.10.602.2E-63189IPR009057Homeodomain-like
CDDcd080620222499No hitNo description
PfamPF013986.3E-30222331IPR000555JAB1/MPN/MOV34 metalloenzyme domain
SMARTSM002326.9E-28223357IPR000555JAB1/MPN/MOV34 metalloenzyme domain
PfamPF130129.6E-36379488IPR024969Rpn11/EIF3F, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0045087Biological Processinnate immune response
GO:0000502Cellular Componentproteasome complex
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MEERMSGFCT TKAGRGGSSG NNYASGTKCG RWNPTIEQVK LLTDLFRSGV RTPSTDEIQN  60
ISARLSFYGK IESKNVFYWF QNHKARERQK RRRVSVDEKD VMIIRDEKFS SARYFTEISP  120
VNEREQVIET LQLFPIKSFD EVESEKFRLQ ANECNEAAEM DRPQLDLREE NKKQNQLHTS  180
WENKRFPSEQ ALSSRRRVVQ FLGKKLRMDV IKTQQISARP IEKVIVHPLV LLSIVDNYNR  240
VAKDTRKRVV GVLLGSSFKG TVDVTNSYAV PFEEDDKDPS IWFLDHNYHE SMFSMFKRIN  300
AKEHVVGWYS TGPKLRENDL KIHGLFNDYV PNPVLVIIDV QPEELGIPTK AYYAVEENAT  360
QKSQKVFVHV PSEIAAHDVE EIGVEHLLRD VKDTTISTLA TEVTGKLAAL KGLDARLKEI  420
RGYLDLVIEG KLPLNHEILY HLQDVFNLLP NLNVADLIKA FAVKTNDMML VIYLSSLIRS  480
VIALHNLISN KMLNKEHEKA EDSKPIVVPS VAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5vfp_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vfq_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vfr_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vfs_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vft_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vfu_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vgz_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vhf_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vhh_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vhi_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
5vhs_Z1e-114221501228526S proteasome non-ATPase regulatory subunit 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993KRRRV
Functional Description ? help Back to Top
Source Description
UniProtActs as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins (By similarity). Required for innate immunity. {ECO:0000250, ECO:0000269|PubMed:22577987}.
UniProtActs as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1451040.0EF145104.1 Populus trichocarpa clone WS01120_G13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312144.20.026S proteasome non-ATPase regulatory subunit 7 homolog A
RefseqXP_011041662.10.0PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A
RefseqXP_011041738.10.0PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A
RefseqXP_011041815.10.0PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A
RefseqXP_024462218.10.026S proteasome non-ATPase regulatory subunit 7 homolog A
RefseqXP_024462219.10.026S proteasome non-ATPase regulatory subunit 7 homolog A
RefseqXP_024462220.10.026S proteasome non-ATPase regulatory subunit 7 homolog A
SwissprotO244120.0PSD7A_ARATH; 26S proteasome non-ATPase regulatory subunit 7 homolog A
SwissprotQ9C7740.0PSD7B_ARATH; 26S proteasome non-ATPase regulatory subunit 7 homolog B
TrEMBLB9HHL60.0B9HHL6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.18e-51WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Fu H, et al.
    Structure and functional analysis of the 26S proteasome subunits from plants.
    Mol. Biol. Rep., 1999. 26(1-2): p. 137-46
    [PMID:10363660]
  2. Fu H,Reis N,Lee Y,Glickman MH,Vierstra RD
    Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome.
    EMBO J., 2001. 20(24): p. 7096-107
    [PMID:11742986]
  3. Yang P, et al.
    Purification of the Arabidopsis 26 S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms.
    J. Biol. Chem., 2004. 279(8): p. 6401-13
    [PMID:14623884]
  4. Huang W,Huang H
    A Novel Function of the 26S Proteasome in Repressing Class-1 KNOX Genes During Leaf Development.
    Plant Signal Behav, 2007. 2(1): p. 25-7
    [PMID:19704803]
  5. Book AJ, et al.
    Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes.
    J. Biol. Chem., 2010. 285(33): p. 25554-69
    [PMID:20516081]
  6. Yao C,Wu Y,Nie H,Tang D
    RPN1a, a 26S proteasome subunit, is required for innate immunity in Arabidopsis.
    Plant J., 2012. 71(6): p. 1015-28
    [PMID:22577987]
  7. Silverblatt-Buser EW,Frick MA,Rabeler C,Kaplinsky NJ
    Genetic Interactions Between BOB1 and Multiple 26S Proteasome Subunits Suggest a Role for Proteostasis in Regulating Arabidopsis Development.
    G3 (Bethesda), 2018. 8(4): p. 1379-1390
    [PMID:29487187]
  8. Asano K, et al.
    Structure of cDNAs encoding human eukaryotic initiation factor 3 subunits. Possible roles in RNA binding and macromolecular assembly.
    J. Biol. Chem., 1997. 272(43): p. 27042-52
    [PMID:9341143]