PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000111.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 744aa MW: 82958.2 Da PI: 5.3132

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000111.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	385.9	4.8e-118	370	741	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+av+++d + a+ lL +++++a ++gd+mqRl f+ +L+arla+s++++ykal +++ts +e+l+a+++f ++P+ k+s + CCG000111.1 370 LRTLLTLCAQAVAADDRRSANDLLRQIRQNAPSTGDAMQRLSNIFADGLEARLAGSGTQIYKALISKPTS---AAEVLKAYHMFLAACPFRKLSDFFS 464 5789************************************************************9999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I++ +e+++rvHi+Df+i++G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpf+fn+ +a+++e++++e+L CCG000111.1 465 NKTIMNIAENATRVHIVDFGIMYGFQWPCLIQRLSSRPGGPPHLRITGIDLPNPGfrPAERVEETGRRLANYANTFKVPFKFNA-IAQKWETIKIEDL 561 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+l+Vn+v++ +llde+v +es+r+ vL+l+++++P+v++ + +n++ F +rf eal ++s+lfd lea+++re er +Ere++g+ CCG000111.1 562 KIDRNEVLVVNSVYRSRNLLDETVVVESPRNIVLNLIRNMNPDVFIQGVVNGAYNAPFFITRFREALFHFSTLFDVLEANVSRELPERLLIEREVFGW 659 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+acegaer+er et+++W++r+ +aGF+++pl++++ +++k ++ + + + ++e+s++l++gWk+r ++++S+W+ CCG000111.1 660 EAMNVIACEGAERIERPETYKQWQMRILRAGFRQLPLNQDIFTTVKGRVEALYHKDFIIDEDSQWLLQGWKGRIVYALSSWK 741 *************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.059	344	721	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-115	370	741	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MIMDQSLRGL YGSVNGLKLS NETQSTSSVQ DLVNAFKLDN NCVNQNYVNS PRVPSDSTLS 60 NSVLSASMSQ EGDSHEDFDF SDVVLKYISK MLMEEEMEDN ICMFQESSVA LLAAEKSLYE 120 LIGEKHPSAP DDPVQFLDQN HERPDENHDL NCSNCTSSTS SSSGSNLLDH GWTCDLGEYR 180 SSRHASQSSY SPGNSSATVD GFVDSPVGPN MFAEIFGESE SVMQFKKGFE EASKFIPNGN 240 LLIDLESKGL FLKDLKEDVK DVLATAGEKR ENDNYADGSR GKKNPHPEEL VEGGRSNKQS 300 AFYSESTASP ADFDMVLLNC GKDDSALQAA LHNGESKSGK SVQQNGQAKG SNGGKARGKR 360 QGGKRDVVDL RTLLTLCAQA VAADDRRSAN DLLRQIRQNA PSTGDAMQRL SNIFADGLEA 420 RLAGSGTQIY KALISKPTSA AEVLKAYHMF LAACPFRKLS DFFSNKTIMN IAENATRVHI 480 VDFGIMYGFQ WPCLIQRLSS RPGGPPHLRI TGIDLPNPGF RPAERVEETG RRLANYANTF 540 KVPFKFNAIA QKWETIKIED LKIDRNEVLV VNSVYRSRNL LDETVVVESP RNIVLNLIRN 600 MNPDVFIQGV VNGAYNAPFF ITRFREALFH FSTLFDVLEA NVSRELPERL LIEREVFGWE 660 AMNVIACEGA ERIERPETYK QWQMRILRAG FRQLPLNQDI FTTVKGRVEA LYHKDFIIDE 720 DSQWLLQGWK GRIVYALSSW KPDC

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MIMDQSLRGL YGSVNGLKLS NETQSTSSVQ DLVNAFKLDN NCVNQNYVNS PRVPSDSTLS  60
NSVLSASMSQ EGDSHEDFDF SDVVLKYISK MLMEEEMEDN ICMFQESSVA LLAAEKSLYE  120
LIGEKHPSAP DDPVQFLDQN HERPDENHDL NCSNCTSSTS SSSGSNLLDH GWTCDLGEYR  180
SSRHASQSSY SPGNSSATVD GFVDSPVGPN MFAEIFGESE SVMQFKKGFE EASKFIPNGN  240
LLIDLESKGL FLKDLKEDVK DVLATAGEKR ENDNYADGSR GKKNPHPEEL VEGGRSNKQS  300
AFYSESTASP ADFDMVLLNC GKDDSALQAA LHNGESKSGK SVQQNGQAKG SNGGKARGKR  360
QGGKRDVVDL RTLLTLCAQA VAADDRRSAN DLLRQIRQNA PSTGDAMQRL SNIFADGLEA  420
RLAGSGTQIY KALISKPTSA AEVLKAYHMF LAACPFRKLS DFFSNKTIMN IAENATRVHI  480
VDFGIMYGFQ WPCLIQRLSS RPGGPPHLRI TGIDLPNPGF RPAERVEETG RRLANYANTF  540
KVPFKFNAIA QKWETIKIED LKIDRNEVLV VNSVYRSRNL LDETVVVESP RNIVLNLIRN  600
MNPDVFIQGV VNGAYNAPFF ITRFREALFH FSTLFDVLEA NVSRELPERL LIEREVFGWE  660
AMNVIACEGA ERIERPETYK QWQMRILRAG FRQLPLNQDI FTTVKGRVEA LYHKDFIIDE  720
DSQWLLQGWK GRIVYALSSW KPDC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-51	353	742	1	379	Protein SCARECROW
5b3h_D	1e-51	353	742	1	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031345.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_011031422.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_011031491.1	0.0	PREDICTED: scarecrow-like protein 9
TrEMBL	A0A2K1ZCG1	0.0	A0A2K1ZCG1_POPTR; Uncharacterized protein
STRING	POPTR_0008s05750.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein