PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000094.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 334aa    MW: 35566.8 Da    PI: 9.2604
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000094.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.4e-3971130362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt GGalrnvPvGgg+r+nk+s+
  CCG000094.1  71 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTSGGALRNVPVGGGCRRNKRSK 130
                  6789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3054119IPR003851Zinc finger, Dof-type
PfamPF027018.8E-3373128IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.53474128IPR003851Zinc finger, Dof-type
PROSITE patternPS01361076112IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVFSSIPAYL GSRNWQQQPN NQPPGAGYEN PQLPPQPAPP PSGGYGDGST GSIRPGSMSD  60
RARVAKTQLP ETALKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTS GGALRNVPVG  120
GGCRRNKRSK GSGRSKFPIK AVSSSGGGLA SNFCTADILG HMPPPLPQLQ ILPPLHHLGD  180
FNSAGIGLDF GGIQHSIGVT AGGGDGVEFQ IGSSTSSNGV AGSILSSGLV EQWRLQQVHQ  240
QVQQFPFLSN MEPPSGLFSF EGGGIESSNY ADQIRSKPLD TTGATHLATV KTEENQRLNL  300
SKKVLGISGI DQHWGGNNAW TDLPGFTSST SHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028625.10.0PREDICTED: dof zinc finger protein DOF3.6-like isoform X2
TrEMBLA0A2K1ZCB10.0A0A2K1ZCB1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.23e-47OBF-binding protein 3