PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000015.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YB

Protein Properties

Length: 174aa MW: 18800 Da PI: 5.8261

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000015.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	185.4	4.4e-58	25	121	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy+eplkvyl++yreleg+ CCG000015.1 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDA 121 69********************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-54	20	131	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-40	28	131	IPR009072	Histone-fold
Pfam	PF00808	2.1E-28	31	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.1E-21	59	77	No hit	No description
PROSITE pattern	PS00685	0	62	78	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.1E-21	78	96	No hit	No description
PRINTS	PR00615	2.1E-21	97	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MADNPTSPAA GSHESGGEQS PRSGVREQDR YLPIANISRI MKKALPANGK IAKDAKDTVQ 60 ECVSEFISFV TSEASDKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKVY LARYRELEGD 120 AKGSARGGDG SSKRDAVGGL PGQNAQFAFQ GSMNYTSPQV QGQHMILPSM PGNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	7e-48	24	116	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	7e-48	24	116	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036599.1	1e-128	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
Refseq	XP_011037351.1	1e-128	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_011038112.1	1e-128	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_024461881.1	1e-128	nuclear transcription factor Y subunit B-1 isoform X1
Refseq	XP_024461882.1	1e-128	nuclear transcription factor Y subunit B-1 isoform X1
Refseq	XP_024461883.1	1e-128	nuclear transcription factor Y subunit B-1 isoform X1
Swissprot	Q8VYK4	4e-83	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A2K1ZBP5	1e-127	A0A2K1ZBP5_POPTR; Uncharacterized protein
STRING	XP_002523912.1	1e-117	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	2e-85	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]