PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_42161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29206.1 Da PI: 7.0455 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l +++ +G g+W++ ar+ g++Rt+k+c++rw++yl PEQU_42161 5 RGPWTLEEDVVLMNYISSHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 52 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.8e-17 | 58 | 101 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PEQU_42161 58 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 101 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.543 | 1 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.02E-31 | 2 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-13 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-15 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-23 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.66E-10 | 7 | 52 | No hit | No description |
SMART | SM00717 | 1.6E-15 | 57 | 105 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.71 | 57 | 107 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.3E-16 | 58 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 60 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.94E-12 | 62 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MELRRGPWTL EEDVVLMNYI SSHGEGRWNS LARCAGLKRT GKSCRLRWLN YLRPDVRRGN 60 ITPEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKHL QCDVDSKQFK 120 DVMRYLWMPR LIERIRAASA NSTVVESVAE YGNLAGGELP FVVGAGWGGL GEIVKPGPES 180 PATTVSSSGA AGYEVAEKVP AAGEGIQLPQ QISGGLWPEA VMSSPGYAYQ GLPELEQYWG 240 LGGEIGENLW SMEDVWYLQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 2 | 105 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020587904.1 | 0.0 | transcription factor MYB78-like | ||||
Swissprot | Q2QZJ8 | 9e-89 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A2I0W9P2 | 1e-162 | A0A2I0W9P2_9ASPA; Myb-related protein 305 | ||||
STRING | XP_008793362.1 | 1e-104 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-83 | myb domain protein 78 |
Publications ? help Back to Top | |||
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