PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41647
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 405aa    MW: 46023.8 Da    PI: 7.3274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41647genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.11.3e-133263991373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++g++ +a+a+L+++s  aspdgd+mqR+a+yfteALa+rl+rs +++y+al+p+ ++ ++ +++++a++lf +++P+l++s+l+ N
  PEQU_41647  26 LIHLLLNCATHVAAGNMDQANAFLEKISFFASPDGDTMQRIASYFTEALARRLLRSFPGVYRALNPELSD-SSFASRFHARCLFLNLFPFLRLSYLVSN 123
                 689**************************************************************99997.7899999********************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIle ++ge+ vH++D++ s + QW+aLlq+La+R++gpp+lRiT+vg+    s+e l+++++ L++ Ae+l++pf+f++ v +rle+l++++Lrvk+
  PEQU_41647 124 QAILETMDGEKVVHVVDLSGSDPNQWIALLQSLAARKDGPPHLRITAVGE----SSEFLSHMASILSNEAEKLDIPFQFHA-VISRLEALDVKSLRVKT 217
                 **************************************************....99*************************.79*************** PP

        GRAS 199 gEalaVnlvlqlhrll.......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                 gEala+ + lqlh ll        ++ +l+s++d++++ ++slsPk++ ++eqe++hn++s+ erf+eal+yy+a+fd+le+++pr+s er+ vE+ l+
  PEQU_41647 218 GEALAITSLLQLHPLLaaaddsaTQRRHLSSKIDSFMSSLWSLSPKIMLITEQESNHNGSSLKERFMEALYYYAAMFDCLESTVPRQSAERARVEKLLF 316
                 ***************988877766666677799****************************************************************** PP

        GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 g+ei+n++aceg er+erhe+le+W +rle+aGF  v ls+    qa+++l++v++dgy+v+ee+g ++l+W++r+L+svSaW
  PEQU_41647 317 GEEIKNIIACEGLERKERHEKLERWMKRLEMAGFWRVGLSYVGLIQARRMLQRVGFDGYQVKEENGNFFLCWQERALFSVSAW 399
                 *********************************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.1841380IPR005202Transcription factor GRAS
PfamPF035144.3E-13126399IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSPTSLSSPY NPWLRDLKSD ERGLLLIHLL LNCATHVAAG NMDQANAFLE KISFFASPDG  60
DTMQRIASYF TEALARRLLR SFPGVYRALN PELSDSSFAS RFHARCLFLN LFPFLRLSYL  120
VSNQAILETM DGEKVVHVVD LSGSDPNQWI ALLQSLAARK DGPPHLRITA VGESSEFLSH  180
MASILSNEAE KLDIPFQFHA VISRLEALDV KSLRVKTGEA LAITSLLQLH PLLAAADDSA  240
TQRRHLSSKI DSFMSSLWSL SPKIMLITEQ ESNHNGSSLK ERFMEALYYY AAMFDCLEST  300
VPRQSAERAR VEKLLFGEEI KNIIACEGLE RKERHEKLER WMKRLEMAGF WRVGLSYVGL  360
IQARRMLQRV GFDGYQVKEE NGNFFLCWQE RALFSVSAWS FRRCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6984021381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595447.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-170SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3S8V5Y00.0A0A3S8V5Y0_9ASPA; Scarecrow-like protein 3
STRINGGSMUA_Achr8P09690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-161scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]