PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_41442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 24584 Da PI: 4.3822 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.8e-08 | 1 | 25 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+ Ia ++ gRt++++k++w+++l PEQU_41442 1 RWSIIAGQLP-GRTDNEIKNYWNSHL 25 4*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.698 | 1 | 29 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-6 | 1 | 29 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-5 | 1 | 25 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 1 | 25 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.26E-5 | 1 | 25 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
RWSIIAGQLP GRTDNEIKNY WNSHLSRRVH CFRRHGESET FIYDIGNIPS SAKRRGGRTM 60 LKNSNVVVSG SNAMDQSNPS HDHDQKQVQN DTNNILCNAS SSSTLTEKEN SSLSLDFDFD 120 LEEVLGPHGD VDAVGSMQEN EMMESRSRDC AAEKEVELGM EESGNVRTDM EKMLKWDLEC 180 LEAKLWEEDG NDHMWPWLCD VGGDTSFDES LCSWLFA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596073.1 | 1e-157 | myb-related protein P-like | ||||
TrEMBL | A0A2I0W7J0 | 2e-99 | A0A2I0W7J0_9ASPA; Transcription factor MYB12 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 9e-16 | myb domain protein 12 |