PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_41397

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 301aa MW: 34447.7 Da PI: 8.7627

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_41397	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.5	2.8e-49	2	126	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 pGfrFhPt+eel+ +yL++k+egk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++++ +g PEQU_41397 2 PGFRFHPTEEELIEFYLRRKIEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENSRPIG 99 9*************************.89***********8778899****************************************** PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLvfy+g+ap+g +++W+m+eyrl PEQU_41397 100 LKKTLVFYSGKAPRGIRSSWIMNEYRL 126 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.444	1	147	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-56	2	147	IPR003441	NAC domain
Pfam	PF02365	1.6E-24	2	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MPGFRFHPTE EELIEFYLRR KIEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWFFYV 60 PRDRKYRNGD RPNRVTTSGY WKATGADRMI RSENSRPIGL KKTLVFYSGK APRGIRSSWI 120 MNEYRLPQPE TDRNHKTEIS LCRVYKRPGL EDYRRSPNKT SCKASSSSTP DKNRSQYNPH 180 PASYLQSAAG EPSPSSELGD GKCAEDAMYA SSTIIPIVSL SSTPMEEEDS SQYHLQPPIH 240 CSSAMVASAS TSVHELNRIV GYMNQPQLFP LNQPPPLLSS KLWDWNDPFG DAARDYSANF 300 K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-56	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-56	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-56	2	147	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-56	2	147	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	7e-56	2	147	22	168	NAC domain-containing protein 19
3swm_B	7e-56	2	147	22	168	NAC domain-containing protein 19
3swm_C	7e-56	2	147	22	168	NAC domain-containing protein 19
3swm_D	7e-56	2	147	22	168	NAC domain-containing protein 19
3swp_A	7e-56	2	147	22	168	NAC domain-containing protein 19
3swp_B	7e-56	2	147	22	168	NAC domain-containing protein 19
3swp_C	7e-56	2	147	22	168	NAC domain-containing protein 19
3swp_D	7e-56	2	147	22	168	NAC domain-containing protein 19
4dul_A	6e-56	2	147	19	165	NAC domain-containing protein 19
4dul_B	6e-56	2	147	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020598845.1	0.0	NAC domain-containing protein 35-like isoform X1
Swissprot	Q9ZVP8	1e-101	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2I0WXD5	1e-174	A0A2I0WXD5_9ASPA; NAC domain-containing protein 94
STRING	XP_008804076.1	1e-118	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-103	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]