PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_41376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ARR-B | ||||||||
Protein Properties | Length: 212aa MW: 24554.5 Da PI: 8.1888 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69.1 | 7.3e-22 | 161 | 209 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +r Wt+eLH+rF+++v+qL G +kA+Pk+il++m +gLt+e v SHLQ PEQU_41376 161 ARFTWTSELHTRFIDVVNQL-GVNKAVPKKILNMMATPGLTREIVVSHLQ 209 799*****************.***************************** PP | |||||||
2 | Response_reg | 57.3 | 8.9e-20 | 15 | 102 | 22 | 108 |
TCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS Response_reg 22 gyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108 + +v+++d++++alell ++ +D+ ++D++m++md ++ll++ + e +lp+i+++ ++ e + +a+++Ga d+l+Kp+ eel PEQU_41376 15 SCIIVTVWDHARQALELLSANGdeYDIKITDVNMSDMDEFQLLENVQHEI-NLPVIMISVDSKFEVVMNAINYGAVDYLVKPVRLEELK 102 454899************777678**********************8766.9*********************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 27.295 | 1 | 109 | IPR001789 | Signal transduction response regulator, receiver domain |
SMART | SM00448 | 1.9E-7 | 1 | 105 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 2.42E-21 | 17 | 117 | IPR011006 | CheY-like superfamily |
Pfam | PF00072 | 2.8E-15 | 18 | 102 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 4.9E-23 | 19 | 136 | No hit | No description |
CDD | cd00156 | 2.17E-15 | 19 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 158 | 209 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-12 | 158 | 209 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-18 | 161 | 210 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKYSYIVFFI IKTISCIIVT VWDHARQALE LLSANGDEYD IKITDVNMSD MDEFQLLENV 60 QHEINLPVIM ISVDSKFEVV MNAINYGAVD YLVKPVRLEE LKLIWRYAVK RYLNEKKDAN 120 EIRSKNDKIS ELVKKSKYLV GDRNDDAKIE SKDDLPSRKR ARFTWTSELH TRFIDVVNQL 180 GVNKAVPKKI LNMMATPGLT REIVVSHLQV CS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597792.1 | 2e-93 | two-component response regulator ARR10-like, partial | ||||
TrEMBL | A0A2I0W9B1 | 2e-55 | A0A2I0W9B1_9ASPA; Two-component response regulator ARR10 | ||||
STRING | GSMUA_Achr10P23650_001 | 7e-53 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12043 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 5e-50 | response regulator 2 |