PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_41083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YB | ||||||||
Protein Properties | Length: 213aa MW: 22870.6 Da PI: 8.3288 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 176.2 | 3.2e-55 | 30 | 125 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianvsrimk+ lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGf+ yv plk+yl++yre egek PEQU_41083 30 KEQDRFLPIANVSRIMKRSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFNSYVVPLKAYLNRYRESEGEK 125 89*******************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-52 | 28 | 138 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.74E-39 | 32 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.0E-27 | 35 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.6E-17 | 63 | 81 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 66 | 82 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.6E-17 | 82 | 100 | No hit | No description |
PRINTS | PR00615 | 1.6E-17 | 101 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MKGSRKTTCQ QSMSPASSPP SDTDISGSSK EQDRFLPIAN VSRIMKRSLP ANAKISKEAK 60 ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFNSYVVP LKAYLNRYRE 120 SEGEKNCMAR QQEPEDVAGG REKSLNFGEG NVTVNPVAAA AAAAGLDSGF YAQATGFEGG 180 HGFFGKMGGG VHEGIHGGGR RPALPGQIHG VHW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 3e-45 | 30 | 120 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-45 | 30 | 120 | 2 | 92 | Transcription factor HapC (Eurofung) |
5g49_A | 2e-45 | 28 | 120 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594894.1 | 1e-159 | nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 6e-60 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A2I0W5H4 | 2e-97 | A0A2I0W5H4_9ASPA; Nuclear transcription factor Y subunit B-3 | ||||
STRING | XP_008804488.1 | 6e-70 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 7e-62 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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