PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22301.1 Da PI: 8.1162 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.7 | 1e-43 | 33 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrrkC++dCv+apyfp ++p+kfanvh++FGasnv k+l++l++ +reda++sl+yeA++r+rdPvyG+vg+i+ lq+ql+ql+ +l+++++ PEQU_40902 33 PCAGCKFLRRKCQPDCVFAPYFPPDEPQKFANVHRVFGASNVAKILNELQPFQREDAVNSLAYEADMRLRDPVYGCVGIISVLQHQLRQLQLDLSRART 131 7*********************************************************************************************99987 PP DUF260 100 e 100 e PEQU_40902 132 E 132 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.889 | 32 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-43 | 33 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
QRSEMEPLAL ISAGQAAGAN GGAGNGSQTV STPCAGCKFL RRKCQPDCVF APYFPPDEPQ 60 KFANVHRVFG ASNVAKILNE LQPFQREDAV NSLAYEADMR LRDPVYGCVG IISVLQHQLR 120 QLQLDLSRAR TELCRYQQLL VPVGQTQQQQ QQQQRLGGMR GYGAGMEVGG YDVGMMTAAA 180 AAAFGGHFGR FSGAAGVDDR QSTLGSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-55 | 16 | 136 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-55 | 16 | 136 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596067.1 | 1e-148 | LOB domain-containing protein 6-like | ||||
Swissprot | Q32SG3 | 5e-65 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A2I0VVY1 | 3e-99 | A0A2I0VVY1_9ASPA; LOB domain-containing protein 6 | ||||
STRING | VIT_00s0340g00090.t01 | 1e-64 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 2e-54 | LBD family protein |