PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40826
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family Trihelix
Protein Properties Length: 317aa    MW: 35186.4 Da    PI: 10.539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40826genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.2e-1578161186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +Li+a  e+  +l+rg+l++++W+ev++++ ++  ++++pk   qCk++++ l+k+yk +k  +++      s++p+f++l+
  PEQU_40826  78 CWSEGATSVLIDAWGERYLELSRGNLRQKQWQEVADVVsSRDDYSKTPKsdaQCKNRIDTLKKKYKIEKSKMGS------SSWPFFNRLD 161
                 7*************************************84555655554333*****************99997......57*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-2676161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDDEYDDESR SPSPSFSSPL PLPLSISIAR PSSTPPTDAQ PSNPVTVASS SPHQILTLAL  60
PIQPPLGSSG GGGGREDCWS EGATSVLIDA WGERYLELSR GNLRQKQWQE VADVVSSRDD  120
YSKTPKSDAQ CKNRIDTLKK KYKIEKSKMG SSSWPFFNRL DLLLGPTVKP SPSHTTIPKK  180
QRTNLSAKRK ASTPSSTSDS LPPTANGKRR AVPAGKTREL TRAILRFGEV YQRVESSKLQ  240
QSMEMERQRM EFSRELEEQR MHFFMKTQIE LSQLKRHFRP SSGSGGGSNN HHRHRHGQQA  300
SANRNNNGNQ NFGGGLM
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599119.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG88e-49ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2I0WDT21e-179A0A2I0WDT2_9ASPA; Uncharacterized protein
STRINGXP_010264262.17e-86(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-48sequence-specific DNA binding transcription factors