PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_40802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 24858 Da PI: 9.4269 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.9e-18 | 34 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+d+v+q+G+ +W++Ia+++ gR++k+c++rw++ PEQU_40802 34 RGHWRPAEDARLKDLVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 79 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.5e-17 | 86 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++++eE+++l+ a++++G++ W++I+r ++ gRt++ +k++w+ PEQU_40802 86 KKAFSEEEEDRLLSAHRLYGNK-WALISRLFP-GRTDNAVKNHWHV 129 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.61 | 29 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-28 | 33 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-14 | 33 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 34 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 35 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-12 | 37 | 78 | No hit | No description |
PROSITE profile | PS51294 | 25.367 | 81 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 85 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 86 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 88 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-10 | 88 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MESSDFEGLS EKNCRIEEHE GIELESGNSK HCARGHWRPA EDARLKDLVA QYGPQNWNLI 60 AEKLEGRSGK SCRLRWFNQL DPRINKKAFS EEEEDRLLSA HRLYGNKWAL ISRLFPGRTD 120 NAVKNHWHVI MARRQREQSN AYRRRKPCTS SKFDKRMEVK YSNNACSAES TISSNGFDNL 180 CISRGFPGHG FLTRYSLPQP APRFEYLIGT LYFI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 32 | 134 | 5 | 107 | B-MYB |
1gv2_A | 2e-32 | 34 | 134 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-31 | 34 | 134 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-31 | 34 | 134 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-32 | 34 | 134 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-32 | 34 | 134 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020598432.1 | 1e-155 | transcription factor MYB56-like | ||||
Refseq | XP_020599341.1 | 1e-155 | transcription factor MYB56-like | ||||
Swissprot | Q5NBM8 | 2e-73 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2I0X6L1 | 1e-119 | A0A2I0X6L1_9ASPA; Transcription factor MYB44 | ||||
STRING | Gorai.007G253200.1 | 5e-82 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-71 | myb domain protein 105 |