PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | SBP | ||||||||
Protein Properties | Length: 127aa MW: 13579.5 Da PI: 8.4239 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.5 | 8.6e-24 | 64 | 112 | 1 | 49 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +CqvegC +dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsr PEQU_40599 64 RCQVEGCMVDLSHAKAYYSRHKVCGMHSKSPKVVVAGLEQRFCQQCSRS 112 6**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.9E-25 | 57 | 113 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.922 | 62 | 127 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.1E-22 | 63 | 115 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.5E-18 | 65 | 113 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MEVGSSSLAV SGSSSCDESL HGLKFGQKIY FEDAGNGGGG SSTRAAPNLS ARKGKSQGAA 60 HPPRCQVEGC MVDLSHAKAY YSRHKVCGMH SKSPKVVVAG LEQRFCQQCS RSDCLFFLNF 120 ICCLFFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-13 | 65 | 111 | 11 | 57 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787304.1 | 3e-45 | squamosa promoter-binding-like protein 17 | ||||
Swissprot | Q700W2 | 1e-27 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2H4H290 | 2e-51 | A0A2H4H290_9ASPA; Squamosa promoter-binding-like protein 2 (Fragment) | ||||
STRING | XP_008787304.1 | 1e-44 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25180 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-30 | squamosa promoter binding protein-like 9 |