PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40552 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9873.8 Da PI: 8.991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.4e-09 | 14 | 60 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W++e +l+ +a +++ + +W +Iar +g g+++++ + ++ + PEQU_40552 14 WSKEQNKLFERALAMYDEDtpnRWQKIARFVGGGKSPEDARRHYERL 60 *****************99************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.635 | 9 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-8 | 10 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-4 | 11 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-13 | 12 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-7 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-5 | 16 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MASSSTSRSS SSGWSKEQNK LFERALAMYD EDTPNRWQKI ARFVGGGKSP EDARRHYERL 60 LEDVQKIESG DVPIPNYSTS AANQQHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-27 | 5 | 85 | 2 | 81 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020595489.1 | 1e-59 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-27 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2I0V703 | 1e-43 | A0A2I0V703_9ASPA; Transcription factor RADIALIS | ||||
TrEMBL | A0A482DP25 | 1e-43 | A0A482DP25_9ASPA; RADIALIS 3 (Fragment) | ||||
STRING | GSMUA_Achr2P22930_001 | 3e-33 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-26 | RAD-like 1 |