PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40443 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 507aa MW: 58594 Da PI: 8.4562 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 371.8 | 9e-114 | 134 | 503 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lLl+cA+ +++g++++a+ lL ++++++sp+gd++qRla+y++ +L+arla+++se+y++l ++++ +s++l+a++l+ ++P+ k+s+ aN PEQU_40443 134 NTLLLHCAQTITAGNNQRANDLLRQIRHHSSPHGDAFQRLAHYIADGLEARLAGTGSEVYRSLVNKRKT---VSDVLKAYQLYLATCPFRKLSYSYANM 229 679************************************************************999998...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +Il+ +++++rvHiiDf+i G+QWp +++ L+ Rp+gpp+lRiTg+++p +g +e++eetg+rLa++A+++gv+fe+++ +a ++++++lee++++ PEQU_40443 230 TILDTIQTAKRVHIIDFGIFFGFQWPVFIKMLSLRPGGPPKLRITGIDNPLPGfrPAERIEETGRRLAHYAARFGVSFEYHA-IAAKFNEVKLEEIHFR 327 **************************************************99999***************************.799************* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E+l+Vn+ ++lh l de+v ++ +rd+vLk++++lsP v++ v + +++++ F++rf e l+++sa+fd+l+a++pre+e+r +Er + gr + n PEQU_40443 328 EDEMLVVNSLFRLHGLADETVVVDCPRDRVLKAIRELSPAVFINVVVNGSYGAPFFMTRFREVLYHFSAVFDMLDATVPRENEQRYLLERDMYGRFLIN 426 *************************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ceg e rer et+++W++r +aGF+++pl + +k +k+ +r ++ + + ++e+ +++++ Wk+r L+ +SaWr PEQU_40443 427 AISCEGLE-RERPETYKQWQMRCLRAGFEQIPLCREFVKMVKSKVRAYYHKDFGIDEDGEWVLQEWKGRILYCLSAWR 503 ********.9***************************************889*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.967 | 107 | 483 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-111 | 134 | 503 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
SSSVNDDELF FKTLPASQFE KGVEEAKKFL PSADKLVINF GEIDHKFHRE ATNSSRRPKH 60 HHRDESAFGD LRRKKYSAIS FEEPAVPPQD LDDILLCGSD FPQVVSAIRE KIFNEATNKS 120 TKHRRQNEEV VDLNTLLLHC AQTITAGNNQ RANDLLRQIR HHSSPHGDAF QRLAHYIADG 180 LEARLAGTGS EVYRSLVNKR KTVSDVLKAY QLYLATCPFR KLSYSYANMT ILDTIQTAKR 240 VHIIDFGIFF GFQWPVFIKM LSLRPGGPPK LRITGIDNPL PGFRPAERIE ETGRRLAHYA 300 ARFGVSFEYH AIAAKFNEVK LEEIHFREDE MLVVNSLFRL HGLADETVVV DCPRDRVLKA 360 IRELSPAVFI NVVVNGSYGA PFFMTRFREV LYHFSAVFDM LDATVPRENE QRYLLERDMY 420 GRFLINAISC EGLERERPET YKQWQMRCLR AGFEQIPLCR EFVKMVKSKV RAYYHKDFGI 480 DEDGEWVLQE WKGRILYCLS AWRPSFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-52 | 122 | 504 | 8 | 380 | Protein SCARECROW |
5b3h_A | 2e-52 | 122 | 504 | 7 | 379 | Protein SCARECROW |
5b3h_D | 2e-52 | 122 | 504 | 7 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020595251.1 | 0.0 | scarecrow-like protein 14, partial | ||||
Swissprot | Q9XE58 | 1e-162 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A3G2CI74 | 0.0 | A0A3G2CI74_CYMEN; Scarecrow-like protein 14-like | ||||
STRING | XP_008784606.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-164 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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