PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29248.4 Da PI: 9.7403 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 64 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W++Ia+++ gR++k+c++rw++ PEQU_40332 64 RGHWRPAEDSKLKELVSMYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 109 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 116 | 159 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ PEQU_40332 116 RSAFTEEEEEKLMAAHRLYGNK-WAMIARVFP-GRTDNAVKNHWHV 159 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.595 | 59 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-14 | 63 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-16 | 64 | 109 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-28 | 64 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-13 | 67 | 108 | No hit | No description |
PROSITE profile | PS51294 | 26.683 | 111 | 165 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-15 | 115 | 163 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 116 | 158 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-21 | 118 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-12 | 118 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MISLSINPST SHSTHKPFPF PACSETTEVF GEKHIISVAE EEISRDGGGE NTTDSSGQSK 60 LTARGHWRPA EDSKLKELVS MYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRSAFT 120 EEEEEKLMAA HRLYGNKWAM IARVFPGRTD NAVKNHWHVI MARKYREQSS AHRRRKLNQA 180 MHLRLEEITA SSRPLPPFHF PSSIVGSSPP HLIPNGGMAS LRQKPSDCII SGMLTFFSCN 240 ISSLLFLPVL YPSAITLILP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-34 | 63 | 164 | 6 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020598600.1 | 1e-172 | transcriptional activator Myb-like | ||||
TrEMBL | A0A2I0WGI2 | 1e-135 | A0A2I0WGI2_9ASPA; Transcription factor MYB44 | ||||
STRING | XP_008783843.1 | 1e-88 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 2e-75 | myb domain protein 117 |